Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g861 ATGGAGGCTGCTGCTTTGGAGATACCCGTGTCTGGTGATCCAGTTAAGGGAGAAGAGACAACCCTGATGAAATTTAACGGCGGAGATAAAGGGGGTGTTTGTGATTCCATGAAGGTGCATCTTGTGGCCGCCACAGAAAGATCATCCATGGAGAACAATTCAATAGACCCCTCAACACAAAAGAATCAGGAGGATCGGATCAAATCAGCCAAAGAAGAGGTGGGCGAGGTTAGAGAAGAAAATGAAAGGTTGAAGCAGATATTAGCAAAAATCAAGAAGGACTACCAGTCACTGCAAATGCAGTTCAGTGAAATTGCTCAACATGAGGAAGCTAGGAAATCTACAGATACAATTCTTACTCATCAGGAAGAAGAAGAAGAAGAAACTGATCTTATCTCCCTTAGCCTAGGAAGAGTTTCAAGTGCCGAGTCTAAGAAGGATGACAAAAAGACAAGCTTTCTGAGTGGTAAAGGAAAAGGGGATGAGAAGATGGATGAAGGACTTGCACTAGGGCTGGAATGCAAATTTGAACCCGCCCCTACCGAACACATGATGAATGCAAGCCCTGAAAATAGCTTTGAAGGACCCAAGGAAGAGGAGCCCTCTACTGAGACATGGCCACCCAGTAAGATTCTAAAGATGGGGAGAAGTCGGGATGAAGAAGTTTTAGAGCAAACCCATTTGAAGAAAGCTAGGGTTTCTGTCCGAGCTAGATGCGACACCCCCACGATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAAATAGCAAAAGGAAACCCTTGCCCTAGAGCATACTACCGGTGCACAGTCTCACCATCATGCCCTGTGAGAAAGCAGGTGCAAAGATGTGCGGAGGACACGTCCATCTTGATCACCACCTATGAAGGAACTCACAACCACCCACTTCCTGTTTCAGCAACAGCAATGGCTTCCACCACATCTGCTGCCGCCTCCATGCTACGCTCCGGCTCCTCCACCTCACAACCAGGCATGGAGGCCTTCGCTACCTCCTCTACTGCCAACCTCCACGGCTTAAACTTTTCTATACCCCAAAATTCAAGATCACAGCAATTCTACTTCCCCAATTCTTCATTCTCAACTTCCAATTCACACCCAACTATCACTCTTGATCTCACTGCACCAACTGCTTCTCATTTCAATAGGTTGTCTTCAAGTTTCCCTTCTGCACCAAGATATCCTGCAACTTGCCTCAACTTTTCTTCTTCTTCATCTTCGTCTCCTTTAGATCCCAACAACCTACCAACATCTTGGGGTACCCTTCCTAGTTATGGGGCACTGTCGTCCTACAACAAAAACCAGATTGGGCCTTTCAACTTTGGAATGCAACCACCCTCCCAAGAAAACATTTATCAACCTTACATGCAGAAGATCAACAACCAGGCTCCTTCCCAACAATCTCTTACAGAGACCATAGCCACCGCAACCAAGGCAATCGCAGCCGACCCGACATTCCGATCAGCATTAGCTGCTGTCATCACGTCATTTGTTGGTAATGCAGGTGGTGCAGGTGGAGGAGAGAACCACGTCAAGGGAGAAAACCCTAGCCATAATTTGAAGTGGGGTGAGTTCTTATCTGTGAACTCCGCATTGGCATCTTCTCATAATGGAGTAGGGTGTGCCTCAAGTTACTTGAACCGTTCCTCTTCTGCAAATTCTCAACAACAAGGGAACTTGATTTCGTACCCGCCTTCATTTCCATTTTCTGTACCTAAGAGTGCTTCTGCTTCCCCTTCTGATCACAAAGATAATATCCAGTGA 1785 46.39 MEAAALEIPVSGDPVKGEETTLMKFNGGDKGGVCDSMKVHLVAATERSSMENNSIDPSTQKNQEDRIKSAKEEVGEVREENERLKQILAKIKKDYQSLQMQFSEIAQHEEARKSTDTILTHQEEEEEETDLISLSLGRVSSAESKKDDKKTSFLSGKGKGDEKMDEGLALGLECKFEPAPTEHMMNASPENSFEGPKEEEPSTETWPPSKILKMGRSRDEEVLEQTHLKKARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPSCPVRKQVQRCAEDTSILITTYEGTHNHPLPVSATAMASTTSAAASMLRSGSSTSQPGMEAFATSSTANLHGLNFSIPQNSRSQQFYFPNSSFSTSNSHPTITLDLTAPTASHFNRLSSSFPSAPRYPATCLNFSSSSSSSPLDPNNLPTSWGTLPSYGALSSYNKNQIGPFNFGMQPPSQENIYQPYMQKINNQAPSQQSLTETIATATKAIAADPTFRSALAAVITSFVGNAGGAGGGENHVKGENPSHNLKWGEFLSVNSALASSHNGVGCASSYLNRSSSANSQQQGNLISYPPSFPFSVPKSASASPSDHKDNIQ* 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10977205 10982423 + Vvi1g861 Vvi1g861 770061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g861 594 Gene3D WRKY domain 229 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1g861 594 ProSiteProfiles WRKY domain profile. 239 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g861 594 MobiDBLite consensus disorder prediction 556 594 - -
Vvi1g861 594 SMART WRKY_cls 244 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g861 594 MobiDBLite consensus disorder prediction 179 210 - -
Vvi1g861 594 MobiDBLite consensus disorder prediction 61 79 - -
Vvi1g861 594 SUPERFAMILY WRKY DNA-binding domain 237 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1g861 594 MobiDBLite consensus disorder prediction 106 164 - -
Vvi1g861 594 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 54 590 IPR044810 GO:0003700
Vvi1g861 594 MobiDBLite consensus disorder prediction 141 164 - -
Vvi1g861 594 Pfam WRKY DNA -binding domain 245 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g861 594 MobiDBLite consensus disorder prediction 106 120 - -
Vvi1g861 594 Coils Coil 60 101 - -
Vvi1g861 594 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 54 590 - -
Vvi1g861 594 MobiDBLite consensus disorder prediction 44 79 - -
Vvi1g861 594 MobiDBLite consensus disorder prediction 46 60 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g861 Vvi14g1493 ECH
Vvi1g861 Vvi17g518 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14540 PF03106 WRKY 2.70E-24 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g861 - - vvi:100262076 1127.46