Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g862 ATGGCACAAGCACAGGAAGCTAAGGAGAGTCCACAACTTTTAAGTTGTGATGCTTATTTCGAGAACATCCAGTCGAGGAAAAAACTACCACGATCCTTGCAGGAGTCTCTAACAGCTGCATTTGCAAGGATTCCAGTTTCATCTTTCCCTGAAGTACTTGGGGGCAAAGTGGTTGAAATTCGGGGTGATGCAATAATTGCAGAGGCAGTTAAAACTCTATCTCTCTGCAACATTTTGTCTGCCCCTGTGAGGAACCCAGATGCAGGAACCAGTTTGGATTGGAGAGAGAGGTACCTGGGAATCATAGATTACTCAGCGATCATACTTTGGGTGCTAGAGAGTGCGCAGCTTGCTGCAGTTGCTTTTTCTGCCAGTACTGCTACCGCTGCTGGAGTAAGTGCAGGGGCAGTTGGAGCACTTGGAGCACTAGCATTGGGAGCAACAGGGCCTGCTGCTGTTGCTGGAATAACTGTTGCTGCAGTTGGGGCAGCGGTGGCTGGTGGAATGGCTGCTGATAGAGGGATGGGGAAAGATGCTCCCACTGCTGCTGATCATTTGGGAGAGGAGTTCTATAAAGTTCTCTTTCAAGAAGAACCTTTCAAATCAACCACAGTGCAGTCCATACTGAAATCATATCGCAGTGCTCCCTTCCTTCCAGTTGCAACAGATAGTTCTATGTTGAGCGTCTTATTGCTACTCTCCAAATATAGAATGAGGAATGTACCTGTAATCGAACCAGGCCAACCTTTTGTTAAGAACTACATTACACAATCTGCAATTGTTCAGGGCCTTGAGAGATGCAAAGGGAGGGATTGGTTCGATTGTATTGCAGCACATCCTATTTCTGATTTAGGACTTCCTTTCATGTCTCATAATGAGGTTGTTACCATCCAGAGCAATGAGCTGATTCTGGAGGCTTTCAAGAAAATGAAAGACAATAAAATTGGTGGCCTTCCTGTGGTAGAGGGCCCAAGGAAGAAGATTGTTGGGAATGTAAGCATAAGAGATATCAGATTCTTGCTGCTCAATCCAGACCTCTTCTCCAATTTCAGGCAGCTCACTGTGATGGATTTCATGACCACTATTGCTTCTACAACTGAAGAAGCAGGGAATGTTATCCAACCAATGACATGCCATCTAAATTCAGCTCTTGGTAGTGTGATCCACACTCTTGCTGCCAAGTCAGTTCACAGGATTTATGTAGTAGCTGGCCAAGAAGATGAAGTTGTTGGTGTCATAACACTCAGAGATGTGATTTCTTGCTTCATCTTTGAACCTCCTAACCATTTTGACAACTACTTTGGCTTTACTGTGAAAGAAATGTTAAATAAGTGA 1335 44.64 MAQAQEAKESPQLLSCDAYFENIQSRKKLPRSLQESLTAAFARIPVSSFPEVLGGKVVEIRGDAIIAEAVKTLSLCNILSAPVRNPDAGTSLDWRERYLGIIDYSAIILWVLESAQLAAVAFSASTATAAGVSAGAVGALGALALGATGPAAVAGITVAAVGAAVAGGMAADRGMGKDAPTAADHLGEEFYKVLFQEEPFKSTTVQSILKSYRSAPFLPVATDSSMLSVLLLLSKYRMRNVPVIEPGQPFVKNYITQSAIVQGLERCKGRDWFDCIAAHPISDLGLPFMSHNEVVTIQSNELILEAFKKMKDNKIGGLPVVEGPRKKIVGNVSIRDIRFLLLNPDLFSNFRQLTVMDFMTTIASTTEEAGNVIQPMTCHLNSALGSVIHTLAAKSVHRIYVVAGQEDEVVGVITLRDVISCFIFEPPNHFDNYFGFTVKEMLNK* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10983755 10987218 + Vvi1g862 Vvi1g862 770062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g862 444 SUPERFAMILY CBS-domain pair 261 432 IPR046342 -
Vvi1g862 444 SMART cbs_1 216 265 IPR000644 -
Vvi1g862 444 SMART cbs_1 374 423 IPR000644 -
Vvi1g862 444 SMART cbs_1 293 342 IPR000644 -
Vvi1g862 444 PANTHER BNAANNG38820D PROTEIN 11 444 - -
Vvi1g862 444 Gene3D - 276 425 IPR046342 -
Vvi1g862 444 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 444 - -
Vvi1g862 444 CDD CBS_pair_SF 293 419 - -
Vvi1g862 444 Pfam CBS domain 358 420 IPR000644 -
Vvi1g862 444 Pfam CBS domain 289 342 IPR000644 -
Vvi1g862 444 SUPERFAMILY CBS-domain pair 37 263 IPR046342 -
Vvi1g862 444 ProSiteProfiles CBS domain profile. 289 347 IPR000644 -
Vvi1g862 444 ProSiteProfiles CBS domain profile. 359 432 IPR000644 -
Vvi1g862 444 CDD CBS_pair_SF 235 337 - -
Vvi1g862 444 Gene3D - 51 268 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g862 - - - vvi:100243233 758.059
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g862 . . . . . . Bma14g01634 . Cmo04g01714 Cmo18g01195 . Cma18g01170 . Car18g01079 Sed08g0035 Cpe09g00157 Cpe01g01449 Bhi07g01598 Tan04g1112 Cmetu10g1744 Lac13g0290 . . . Cla05g02467 Cam05g2652 Cec05g2687 Cco05g2721 Clacu05g2656 Cmu05g2508 Cre05g2624 . Cone19ag0967 . . Lsi04g00452 Csa05g02423 Chy10g00979 Cme10g00442 . . Bda07g01459 . Bpe11g01631 . . . . . . Cma04g01636 . Car04g01677 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009000 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 0 1 1 1 33