Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g863 ATGAAGCGCGACATTGCAAAACTGGTTTCCAATGGATTCTACAGAGAAGCCCTTTCTTTATACTCCAAACTCCACTCTTCCTCCGTCCTTGAGCACAAATTCACCTTCCCTTTTCTTCTCAAAGCCAGTGCCAAGCTCAATTCACCTCTCCAAGGCCAAATCCTACACACCCAACTCATTAAAACCGGATTTCATTTAGATATTTATGCGGCCACTGCTCTCGCAGACATGTACATGAAACTTCATCTTTTGAGCTATGCTCTCAAGGTGTTCGAAGAAATGCCTCACCGAAACTTGCCTTCACTGAACGTCACGATTTCTGGATTTTCGCGAAATGGGTATTTCAGAGAGGCCCTGGGGGCGTTCAAACAGGTGGGGTTGGGGAATTTCAGGCCCAATTCAGTTACCATAGCTAGTGTTCTGCCTGCATGTGCAAGTGTTGAACTTGATGGGCAAGTACATTGCTTGGCGATAAAGTTGGGTGTTGAGTCGGATATTTATGTGGCGACCGCGGTTGTGACGATGTATTCGAATTGTGGGGAGCTGGTTTTGGCTAAGAAAGTGTTTGATCAGATTTTGGATAAGAATGTTGTCAGCTACAATGCTTTTATTTCAGGGCTTTTGCAAAATGGGGCTCCGCATTTGGTCTTTGATGTGTTTAAGGACTTGTTGGAGTCTTCAGGTGAAGTACCCAATTCGGTGACACTGGTTTCAATTCTTTCTGCATGTTCGAAACTTTTGTATATTCGATTTGGTAGGCAGATTCATGGGCTGGTTGTGAAGATTGAGATCAATTTTGATACTATGGTGGGAACTGCACTTGTGGACATGTACTCCAAATGTGGTTGTTGGCATTGGGCTTATGGCATATTCATAGAACTGAGTGGCAGCAGGAACCTAGTAACATGGAATTCAATGATTGCTGGAATGATGTTGAATGGTCAGAGTGACATTGCTGTTGAACTTTTTGAACAGTTAGAACCTGAAGGATTGGAACCTGATTCAGCAACATGGAATACAATGATTAGTGGGTTTTCGCAACAAGGGCAGGTGGTTGAAGCTTTTAAGTTCTTCCATAAAATGCAATCAGCTGGTGTAATAGCTAGTTTAAAATCTATCACAAGTCTTTTACGGGCTTGCTCAGCTCTGTCTGCTTTGCAAAGTGGAAAAGAGATTCATGGGCACACAATTAGAACCAATATCGATACTGATGAATTCATTTCTACTGCACTCATTGACATGTACATGAAATGCGGTCATTCTTATTTGGCTCGAAGAGTTTTTTGCCAGTTTCAGATAAAACCTGATGACCCAGCATTTTGGAATGCAATGATTTCTGGGTATGGAAGGAATGGAAAGTATCAATCTGCATTTGAGATTTTCAATCAGATGCAGGAAGAAAAAGTGCAACCAAATTCAGCAACACTCGTCAGTATCCTATCTGTGTGCAGTCACACAGGTGAGATTGACAGAGGATGGCAATTGTTTAAGATGATGAATAGAGACTATGGCCTGAACCCAACTTCGGAGCATTTTGGTTGCATGGTTGACCTTTTAGGTAGATCTGGTAGGTTGAAGGAAGCTCAAGAACTTATTCATGAAATGCCAGAGGCATCCGTTTCTGTTTTCGCTTCTTTGCTTGGTGCTTGTAGGCATCATTCGGATTCTGCTTTGGGAGAAGAAATGGCTAAAAAACTTTCAGAGTTAGAGCCACAGGACCCAACCCCTTTTGTGATTTTGTCCAACATATATGCTGTTCAAGGAAGGTGGGGTGATGTAGAAAGGGTCAGAGAAATGATGAATGATAGGGGATTGAAAAAACCCCCTGGCTGTAGTTCAATTGGAGTGACATGA 1854 42.5 MKRDIAKLVSNGFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVELDGQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMPEASVSVFASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERVREMMNDRGLKKPPGCSSIGVT* 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10987352 10989206 - Vvi1g863 Vvi1g863 770063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g863 617 Gene3D Tetratricopeptide repeat domain 153 249 IPR011990 GO:0005515
Vvi1g863 617 Gene3D Tetratricopeptide repeat domain 392 488 IPR011990 GO:0005515
Vvi1g863 617 Gene3D Tetratricopeptide repeat domain 261 391 IPR011990 GO:0005515
Vvi1g863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Vvi1g863 617 Gene3D Tetratricopeptide repeat domain 489 614 IPR011990 GO:0005515
Vvi1g863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 231 IPR002885 -
Vvi1g863 617 Pfam PPR repeat family 333 380 IPR002885 -
Vvi1g863 617 Pfam PPR repeat family 195 244 IPR002885 -
Vvi1g863 617 Pfam PPR repeat family 440 482 IPR002885 -
Vvi1g863 617 Pfam PPR repeat 103 124 IPR002885 -
Vvi1g863 617 Pfam PPR repeat 72 98 IPR002885 -
Vvi1g863 617 Pfam PPR repeat 512 538 IPR002885 -
Vvi1g863 617 Pfam PPR repeat 272 294 IPR002885 -
Vvi1g863 617 Pfam PPR repeat 301 326 IPR002885 -
Vvi1g863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Vvi1g863 617 TIGRFAM PPR: pentatricopeptide repeat domain 198 232 IPR002885 -
Vvi1g863 617 TIGRFAM PPR: pentatricopeptide repeat domain 337 367 IPR002885 -
Vvi1g863 617 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Vvi1g863 617 TIGRFAM PPR: pentatricopeptide repeat domain 441 472 IPR002885 -
Vvi1g863 617 Pfam E motif 553 614 IPR046848 -
Vvi1g863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Vvi1g863 617 PANTHER OS07G0578800 PROTEIN-RELATED 6 612 IPR045215 GO:0003723|GO:0009451
Vvi1g863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Vvi1g863 617 Gene3D Tetratricopeptide repeat domain 1 152 IPR011990 GO:0005515
Vvi1g863 617 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 612 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g863 - - - vvi:100256969 1229.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g863 . . . . . Bpe10g00857 . Bma15g00168 Cmo04g01715 . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0966 . . . . . . . . . . . . . . . . . Cma04g01637 . Car04g01678 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015078 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 1 1 0 1 1 1 1 14