Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g866 ATGGAGAGCTTCTGGGTTTTCTTCTGTTTCTTGTTTTCTGTAATCATTTTCCCAGTTTCCATGGGGCAACTGACTCCGACAGAAGGTCGAATTCTTCTCCAAGTTCAGCAACTTCTCGAGTACCCAGAAGCTCTTCAAGGCTGGAACAACTGGACTAGCTTCTGCTATCTTCCTCACTCGCCCTCTCTCAAGATCGTCTGTACAGATAATCGCGTGACTGAATTAACTATCATCGGAAACAAAAGCTCGCCTTCTAAATTCTCCATTGATGCTTTCTTCACAGTTCTAACCAAGCTCTCACACGTCCAAGTGCTGTCACTAGTGTCCTTGGGAATGTGGGGTCACTTGCCACCAAAGGTTAATAGGTTCCAAGCACTGGAAGTGCTGAATATCAGTTCAAATTTCATCTATGGAGAGCTTCCCCGGACAATCTCAACTTTTATAAGTCTTAGGAGTATTGTGCTGGCTGATAATTTGTTGAATGGGAGCGTTCCGGATCTTAGAAGCTTGCTTCTTCTTGAAGAACTCAACCTGGGTGACAATCGCTTTGGACCTGAATTTCCTTCTCTGGGAGCCAGTTTGGTTAGTGTGGTACTGAAGAACAATTCTCTAAGATCTGTTATTCCTTTAGGACTCATGAATTTTGATAGGCTTCAGCAATTCGATATCTCTTCCAACAAATTTGTGGGACCGATCCCGTCTTCCATATTTTATCTGCCTTCAATTCAGTACCTCAATTTGGCCAAAAATCAATTCACGGGGGCCTTTCAAACAAATATATCCTGCAGTGGTAACCTCAGATTTGTGGATATTTCGCACAACCATTTGATAGGAAAGTTGCCCTCCTGCGTTAGATCAAATTCTTCGAATTTGACTGTTATCAGTTCTTGGAACTGTTTATCTGGTGGAAACTTGGGTTATCAGCTTCCCAATTCAGTCTGCCGAAAAGAAGCATTGGCTGTTAAGCCTCCAACAAGAAATGATGCGCAGAAGTCCAGCAGCAAACTAGGCCTGATACTTGGTGTGGTGGCAGGCATTGTGGGGGTTCTGGTGGTTCTGGGGCTGTTGACTTTGGCCATTTTCAGAAAATCACGACCAAATAAATCTGAAACAGATATATTTAATCAAGGATCGGTTGCTTATAAGTCTCCTCTTCACAGCTCCTCCAAACCAATCAGCGAAGCAAGACATGTGCCCACCACAATGGGGTTCGGCACACTGGGGCTCCCACCGTATCATGTTTTCACTTTGGAAGAAATGGAAGACGCAACAAACAACTTCGATCCATCTAATTTGATAGCAGAGGGATCTCAAGGACAGTCCTACAAAGGGTGGCTCAGAGATGGCTCAGAAGTCCTGGTGAAATGTCTGAAATTGAAGCACAAGCATTCACCTCAAAGCTTGCCACAGCAAATGGAAGCAGTAACAAAACTGAGGCATCAACATTTGGTCAGCGTTCTTGGACACTGTATTGTCACATACCAGGAACATCCCAATACCGCTAGCACGGTCTTCCTCGTCGTTGAACATGTTGCAAACGGGTCGCTCAGGGATCATCTTACTGACCGGAGGAGAAGAGAGATACTGAAATGGCCGCAGAGATTGGGAATCTCCATTGGCATTGCAAGGGGAATCCAGTTCTTGCACACTGGAAATGCACCAGGCATTTTTGGGAACAATTTGAAGATTGAGAATGTGCTGTTGAATGAGAAGCTTACTACAAAGATTAGTAACTACAATATTCCCTTGAGATTTAAGGTGGGTTCAGAAAGCCCTCTCAATGGACCAAAGTTCCGCAGTGATCTCCAAGGTGCCCAAGAGGCGGAAAGGGATGATATTTATCAGCTGGGTGTAATTCTGCTTGAAATCATCACTGGAAAGCAAGTAACAAGCGAGAGTGAATTGGATGAGTTGAAACTCCAGCTGGAAAGGGGCTTAACGGAAGCGGCATCAAAACTCCGGGCATTAACAGACCCCTCAATTCGTGGTACCTTCGCTTATGAATCATTGACAAACACTGTCCAAATCACCCTCAACTGTCTCTCCAAGGATTCCAGGAAGCGCCCATCAATAGCAGATGTCCTTTGGAACTTGCAGTACTCAGTTCAAGTTCAGGAAGGATGGGCAAGCAGTGAAGGCCTTAGCACCCAGCCGCAATGCTAG 2163 45.03 MESFWVFFCFLFSVIIFPVSMGQLTPTEGRILLQVQQLLEYPEALQGWNNWTSFCYLPHSPSLKIVCTDNRVTELTIIGNKSSPSKFSIDAFFTVLTKLSHVQVLSLVSLGMWGHLPPKVNRFQALEVLNISSNFIYGELPRTISTFISLRSIVLADNLLNGSVPDLRSLLLLEELNLGDNRFGPEFPSLGASLVSVVLKNNSLRSVIPLGLMNFDRLQQFDISSNKFVGPIPSSIFYLPSIQYLNLAKNQFTGAFQTNISCSGNLRFVDISHNHLIGKLPSCVRSNSSNLTVISSWNCLSGGNLGYQLPNSVCRKEALAVKPPTRNDAQKSSSKLGLILGVVAGIVGVLVVLGLLTLAIFRKSRPNKSETDIFNQGSVAYKSPLHSSSKPISEARHVPTTMGFGTLGLPPYHVFTLEEMEDATNNFDPSNLIAEGSQGQSYKGWLRDGSEVLVKCLKLKHKHSPQSLPQQMEAVTKLRHQHLVSVLGHCIVTYQEHPNTASTVFLVVEHVANGSLRDHLTDRRRREILKWPQRLGISIGIARGIQFLHTGNAPGIFGNNLKIENVLLNEKLTTKISNYNIPLRFKVGSESPLNGPKFRSDLQGAQEAERDDIYQLGVILLEIITGKQVTSESELDELKLQLERGLTEAASKLRALTDPSIRGTFAYESLTNTVQITLNCLSKDSRKRPSIADVLWNLQYSVQVQEGWASSEGLSTQPQC* 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11013834 11016961 - Vvi1g866 Vvi1g866 770066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g866 720 Pfam Protein tyrosine and serine/threonine kinase 432 695 IPR001245 GO:0004672|GO:0006468
Vvi1g866 720 ProSiteProfiles Protein kinase domain profile. 427 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g866 720 Gene3D Transferase(Phosphotransferase) domain 1 511 711 - -
Vvi1g866 720 Gene3D Ribonuclease Inhibitor 192 322 IPR032675 -
Vvi1g866 720 SUPERFAMILY Protein kinase-like (PK-like) 407 698 IPR011009 -
Vvi1g866 720 Gene3D Ribonuclease Inhibitor 26 191 IPR032675 -
Vvi1g866 720 PANTHER BNAC05G10630D PROTEIN 9 715 - -
Vvi1g866 720 PANTHER OS07G0166700 PROTEIN 9 715 IPR045272 GO:0004714|GO:0006468
Vvi1g866 720 Gene3D Phosphorylase Kinase; domain 1 403 497 - -
Vvi1g866 720 SUPERFAMILY L domain-like 34 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g866 - - - vvi:100245028 1367.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g866 . . . . . Bpe10g00858 . Bma15g00250 . Cmo18g01192 . Cma18g01168 . Car18g01077 . Cpe09g00160 . Bhi07g01594 . . Lac13g0294 . . . Cla05g02463 Cam05g2650 Cec05g2685 Cco05g2719 Clacu05g2654 Cmu05g2506 Cre05g2622 Cone13ag0974 Cone19ag0964 . . Lsi04g00446 Csa05g02427 Chy10g00981 Cme10g00438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012316 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76525 PF07714 PK_Tyr_Ser-Thr 2.30E-19 CL0016 Vvi PK