Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g867 ATGGGGAAATCCCCTGGAAAATGGATCAAAGGGCTACTGTTTGGGAAGAAATCATCCAAATCTAATTTGTCAAAGGGAAGAGAAATTTCAAAACATGCAAGCAAGGGAGATGCATTAGTTTGTGCTAAGGTACCAGCATCTGATTTGACTGTTGATGCTCCCTTGACTTCACTCCCTGTTCCTCTCACCACTGCTAGAAATGGAGTAGTCTCAGACTCAGAAAAGGGAACAGCTTCTAGATTACCAAATGATGGAGTTATTTTATCATCTTCAAAGGAAAATGGGGATACAGAAACAATCATGAATTTGGGTTTATCAAAAGATCCTGAAAGAATCAGACATGAACAAGCTGCAACAAAGGCACAAGCTGCATTCAGGGGTTATTTGGCTCGACGAGCATTTCGAACCCTTAAGGGCATCATAAGGCTTCAAGCACTTGGTCGCGGCCGTTTGGTTAGAAGACAAGCTATAGCCACCTTATGCTGTGTGCAGGGAATTGTTAAGTTCCAGGCGCTGGTTCGTGGCCAAAGTGTCAGACATTCTAATATCGGGACTGAAGTGCATGAAAAACTGAGTGCGAGAAAATTTCCGGATGCCAAATGTTCAAACTCGTTTGGGTTACAAACATCTAATCAGGCAGAGAAGCTGTCAAAAAATGTTTTTGTCTGTACGCTTCTTGCTTCATCACCTACATCAATGCCTCTGCACCTTCAGTATGGTCCTGGGGAGCCAAACTCAGCCTGGGATTGGCTAGAACGTTGGACGAAGTCACATTTTTGGGAACCCCTAACAAAACCCAAAAAGATTATTGACTCAAAGTCTCAGAAAAAGCGTGGCACTTCTCAAACGGTAGAAACTGATCGAAGTAGGCCAAAACGAAGTGTTCGAAAAGCAACCAGTGCAAAATTTGAAAATGGATCTACTCAGTCGACATTAGAGTCAGATAAACCTAAACGCAACCTGAGGAAAGTTTCAAGCCATCCAGTAGATTCTGTTCAGGAGCATCCAAAAAATGCAACTGAGAAGACTAAAAGTAAATTAAGAAAAAATCTGAAATCCACATCAGATGCTTCTGATCAGCTAGAGGTTAAAGCTGAGAAACCCAAGCAGAGTCTGAGGAAATCATCAAGCGCTGCCTCTGATGCCCCTGAGCAGGGCACTGGGGATTCTCTTAAAAAGATCAAGAAGGATATGGCAGTGACAGTGTCAAAACAGTCTGATATTGAGACAAGTCTGAAACCACCTGCTGAAAATGAGCTAGTTGATAATGTACATGATCATACTCTGGCTGACTTGCAATGTGTGGAAAACAATGGTAAAAGCGAGAATATTCCTGAAGCGAACAAGGACATGAGCTATAAGGATAATGATATTAGCAATGATGACCAGAAAACCAGCCAGAGAAGAGCTTCTTTACCTGGAAAGCATGATTATCAAGAGAATGGGTTACATAACACACCAAGACTGCCTAGCTATATGGCAGCAACTGAATCTGCGAAGGCCAAACTGAGAGCATTAAGCTCCCCGAGGTTTGGCCAAGATGAGGCTGATAAGAATGGTATCACCAGACGGCATTCTCTACCATCATCTTCTACCAATGGCAAGTTGAGTTCATGGTCACCACGAGCGCAAAGACTGGTCCAAGCAAGTGGCAAAGGAGTGTTCAGAAGTGACAGATCTTTAATGTCTTCTAGAGACGGTAGTGAGAAGTTGCTGCAACCAGAGTGGAGGAGGTGA 1737 43.24 MGKSPGKWIKGLLFGKKSSKSNLSKGREISKHASKGDALVCAKVPASDLTVDAPLTSLPVPLTTARNGVVSDSEKGTASRLPNDGVILSSSKENGDTETIMNLGLSKDPERIRHEQAATKAQAAFRGYLARRAFRTLKGIIRLQALGRGRLVRRQAIATLCCVQGIVKFQALVRGQSVRHSNIGTEVHEKLSARKFPDAKCSNSFGLQTSNQAEKLSKNVFVCTLLASSPTSMPLHLQYGPGEPNSAWDWLERWTKSHFWEPLTKPKKIIDSKSQKKRGTSQTVETDRSRPKRSVRKATSAKFENGSTQSTLESDKPKRNLRKVSSHPVDSVQEHPKNATEKTKSKLRKNLKSTSDASDQLEVKAEKPKQSLRKSSSAASDAPEQGTGDSLKKIKKDMAVTVSKQSDIETSLKPPAENELVDNVHDHTLADLQCVENNGKSENIPEANKDMSYKDNDISNDDQKTSQRRASLPGKHDYQENGLHNTPRLPSYMAATESAKAKLRALSSPRFGQDEADKNGITRRHSLPSSSTNGKLSSWSPRAQRLVQASGKGVFRSDRSLMSSRDGSEKLLQPEWRR* 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11028168 11033705 + Vvi1g867 Vvi1g867 770067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g867 578 SMART iq_5 113 135 IPR000048 GO:0005515
Vvi1g867 578 PANTHER - 1 572 - -
Vvi1g867 578 PANTHER IQ-DOMAIN 5-RELATED 1 572 - -
Vvi1g867 578 MobiDBLite consensus disorder prediction 523 545 - -
Vvi1g867 578 Pfam IQ calmodulin-binding motif 116 135 IPR000048 GO:0005515
Vvi1g867 578 Pfam Protein of unknown function (DUF4005) 445 557 IPR025064 -
Vvi1g867 578 MobiDBLite consensus disorder prediction 315 371 - -
Vvi1g867 578 MobiDBLite consensus disorder prediction 268 418 - -
Vvi1g867 578 MobiDBLite consensus disorder prediction 300 314 - -
Vvi1g867 578 MobiDBLite consensus disorder prediction 69 92 - -
Vvi1g867 578 MobiDBLite consensus disorder prediction 562 578 - -
Vvi1g867 578 MobiDBLite consensus disorder prediction 268 299 - -
Vvi1g867 578 Coils Coil 344 364 - -
Vvi1g867 578 MobiDBLite consensus disorder prediction 447 475 - -
Vvi1g867 578 MobiDBLite consensus disorder prediction 388 402 - -
Vvi1g867 578 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Vvi1g867 578 MobiDBLite consensus disorder prediction 433 578 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g867 - - - vvi:100267340 1125.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g867 Vvi14g1496 ECH
Vvi1g867 Vvi17g521 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34