Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g872 ATGGAGCTCACTCAGAGTCAGCACAATCACTCTGGAGCTATTGTCATCCTTCTCCTGGTATTTTGTGGATTTACTGTCATGGATATTGTTGATGCAGTTTGGTTCAACCACGGAGGCGACTTGAGTAACAGCAGATCACGCTCCATCGAAGAACCCTTGATCAACCCCCTGCTTATTTCCAAGTTGCGATTGAAATGGAAGTTTTTCACTGGAGATGACACAACAGCAACGCCTGCAGTGGCTCATGGTGTTGTCTACTTTCCTTCATGGAATGGATATTTGTATGCAGTGAATGCATTCAGTGGTGCTCTTGTATGGAGGCAGCATCTAGGGGAGCTCACAGGGCTGAGTCCAGCAGGGGTTGTGGTGAATGTAACTGTGTCAAGAACGACACCTGTAATAGCTGGTCATCTCCTTATCATAGGAATATATGGCCCTGCAGTGGTTGTTGCCATCAATCGGTTTAGCGGGGCACTTGTGTGGTCCACTGTTCTGGATACACGTCCTAGATCTCAAATCACCACGTCTGGAACCCCCTACTTAGAGGGTTTCTATGTAGGTGTATCATCACTTGAGGTAACTCTACCGGCTGAACAGTGTTGCACTTTCCGGGGTAGCATGGCGAAGCTAGACATCCAAACTGGAGCCGTCCTATGGCGAACCTATACAATTCCGGACAACGCTGGCAAACTGGGGGGTTATTCGGGAGCTGCTATATGGGGCAGCAGCCCTGCAATTGACACAAAGAGAAATCTTGTTTACATTGGAACTGGGAACCTGTACAATGCTCCAACTGAGGTGCAACAATGTCAAGCCAATCGGAATAATCAAACAATACCCTCTCAACCCGACCAATGCATCGCTCCAGATGTCCACTTCGACTCCATTCTGGCCTTGGAGTTAGACTCTGGAAAAATCAGATGGTTCCGACAATTCGGAGGCTACGATGTATTTTATTTTGTTTGCCTGGTGCCGAATAACCCAGCTTGTCCGACTGGGCCTAACTTGGATGCGGACTTTGGAGAAGCTCCAATGCTGCTCACCATATTTCCAAATGGCACCAGGCGTGACGTTGTGGTTGCTGTGCAGAAAAGTGGGTTTGCATGGGCCCTAGATCGAGATACGGGTGATATAGTATGGTTCAATCTGGCAGGGCCCGGTGGTCTGGAAGGAGGAGGAGTGTGGGGTGCAGCCACAGACGGGAAAAGGGTGTACACTAACATCGTGAATAACGCGGGAGTGAGGTTCAGGCTGGCACCCTCCAACCAAACCACGACGTTCGGAGCATGGGTAGCATTGGATGCAAATACAGGAGAAATTGTATGGTCAACAGCCAACCCCAGCAATGAAACTGCCCATGGCCCAGTGACGGTGACTAATGGAGTGGTTTTTGCTGGGTCAGTGGCCCCTTCAGGCCCATTCTACGCAATGGACGCAGAAACAGGGACTATTATATGGACATATAACACCAATGCCACCGTGTACGGTGGCGCATCAGTGAGCTACGGTTGTGTTTTCTTGGGCCATGGCTATTCAGTGAGTTTAGCCAGGTTCCACCCGACGTGGACTCGAGGAAATTCTGTCTTCGCATTCTGCACTGTGTGA 1605 49.72 MELTQSQHNHSGAIVILLLVFCGFTVMDIVDAVWFNHGGDLSNSRSRSIEEPLINPLLISKLRLKWKFFTGDDTTATPAVAHGVVYFPSWNGYLYAVNAFSGALVWRQHLGELTGLSPAGVVVNVTVSRTTPVIAGHLLIIGIYGPAVVVAINRFSGALVWSTVLDTRPRSQITTSGTPYLEGFYVGVSSLEVTLPAEQCCTFRGSMAKLDIQTGAVLWRTYTIPDNAGKLGGYSGAAIWGSSPAIDTKRNLVYIGTGNLYNAPTEVQQCQANRNNQTIPSQPDQCIAPDVHFDSILALELDSGKIRWFRQFGGYDVFYFVCLVPNNPACPTGPNLDADFGEAPMLLTIFPNGTRRDVVVAVQKSGFAWALDRDTGDIVWFNLAGPGGLEGGGVWGAATDGKRVYTNIVNNAGVRFRLAPSNQTTTFGAWVALDANTGEIVWSTANPSNETAHGPVTVTNGVVFAGSVAPSGPFYAMDAETGTIIWTYNTNATVYGGASVSYGCVFLGHGYSVSLARFHPTWTRGNSVFAFCTV* 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11205575 11207549 + Vvi1g872 Vvi1g872 770072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g872 534 SMART ire1_9 78 109 IPR018391 -
Vvi1g872 534 SMART ire1_9 397 445 IPR018391 -
Vvi1g872 534 SMART ire1_9 455 489 IPR018391 -
Vvi1g872 534 SMART ire1_9 244 311 IPR018391 -
Vvi1g872 534 SMART ire1_9 132 164 IPR018391 -
Vvi1g872 534 PANTHER POLYVINYLALCOHOL DEHYDROGENASE-LIKE 34 533 - -
Vvi1g872 534 PANTHER QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) 34 533 - -
Vvi1g872 534 Pfam PQQ-like domain 75 308 IPR002372 -
Vvi1g872 534 Pfam PQQ-like domain 370 493 IPR002372 -
Vvi1g872 534 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 32 497 IPR011047 -
Vvi1g872 534 Gene3D - 27 511 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g872 - - - vvi:104879807 1092.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g872 Vvi14g1501 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g872 . . . . . Bpe10g00859 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006756 0 0 1 1 1 1 0 1 2 1 1 1 0 1 0 0 1 4 0 1 1 2 1 0 2 1 1 1 1 8 35