Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g874 ATGGGAAATTGTCTTAAGAAGAAGAAACTTGAAGATCCCAACAGAGATGATGCTCGACCACCAACTGAGAGGGATACAGAGCTAACCTGGGGGAGAAGAATCAAAATAGCAGTTGGGGTAGCCAGGGGTTTAGATCATCTTCACACTGTTCCGAGGCCAATCATTCATCGGGATCTAAAGACCTCCAATGTCCTGCTTGATGCTGACTTCAACCCCAAGCTTTCAGACTTCGGACTTGCTAAATATGGTCCTCATGATCATGAAACCCACGTCTCCACAAGGGTACTCGGCACCAAAGGATATGTCGCTCCTGAATACATTGGAACAGGGCATCTCACATTGAAATCCGACGTGTACAGCTTTGGAGTAGTGCTACTAGAGATCTTATCCGGCTCTTCTGCAGTGGATAGATTCTCAAATGGAATGTTAGAGAATCTGGCTGATCATGCTAAACCATATCTGAGCAATAAGCTGCGACTGCCTCATGTTATTGACAAAAGACTTGGGAGCAATTTCAGCATGGAAGAAGCTCAAGAGTTGGCTGAGATAATCCTTCAATGTCTAAATTCAGATGCCAATAGTCGGCCGACCATGACCGAGGTCTTGTCTTCCCTGGAGCAACTAGAGCAACACAGGGACAGCAGCAAACATAACTTACGCGGACTTGCTGCACCCCAGAAGGTCCTCCCACTTAACTTCCACAGAGACATCAAGGAAAATCCTGTGAGCTAA 732 46.31 MGNCLKKKKLEDPNRDDARPPTERDTELTWGRRIKIAVGVARGLDHLHTVPRPIIHRDLKTSNVLLDADFNPKLSDFGLAKYGPHDHETHVSTRVLGTKGYVAPEYIGTGHLTLKSDVYSFGVVLLEILSGSSAVDRFSNGMLENLADHAKPYLSNKLRLPHVIDKRLGSNFSMEEAQELAEIILQCLNSDANSRPTMTEVLSSLEQLEQHRDSSKHNLRGLAAPQKVLPLNFHRDIKENPVS* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11232313 11234303 + Vvi1g874 Vvi1g874 770074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g874 243 PANTHER OS01G0588500 PROTEIN-RELATED 23 240 - -
Vvi1g874 243 SMART serkin_6 4 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g874 243 SUPERFAMILY Protein kinase-like (PK-like) 25 214 IPR011009 -
Vvi1g874 243 ProSitePatterns Serine/Threonine protein kinases active-site signature. 54 66 IPR008271 GO:0004672|GO:0006468
Vvi1g874 243 Pfam Protein kinase domain 29 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g874 243 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g874 243 MobiDBLite consensus disorder prediction 1 26 - -
Vvi1g874 243 Gene3D Transferase(Phosphotransferase) domain 1 15 226 - -
Vvi1g874 243 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC-LIKE 23 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g874 - - - vvi:109123422 446.047
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g874 . Blo16g01128 . Bda11g01229 Bpe13g01425 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0606 Cone9ag0611 . . . . . . . Bda11g01229 . . . Bma06g00669 . . . . . . . . Cpe07g00590 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070038 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76526 PF00069 Pkinase 3.70E-31 CL0016 Vvi PK