Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g879 ATGGCTTTCTTCCCAGCCAATTTCATGCTACAGACTCCCCGCGAAGATGATCATCAGCCTCCTAACTCTCTCAATCCAATTCTACCCTCATGCGCACCTCAAGATTTCCATGGTGTTGCATCGCTTCTAGGAAAGAGATCCATGTCGTTTTCAGGTATTGACGTGTGTGAAGAAACAAATGGGGAGGATGATTTGTCTGATGATGGCTCACAGGCCGGAGAAAAGAAGAGGAGGCTGAACATGGAGCAGGTGAAAACACTTGAGAAGAATTTTGAGTTGGGTAACAAGCTTGAGCCCGAGAGGAAAATGCAGCTGGCTAGAGCCCTTGGTCTGCAACCAAGACAGATTGCTATATGGTTCCAAAACAGGAGGGCCAGGTGGAAGACCAAGCAATTGGAGAAAGACTATGATCTCCTTAAGAGACAGTTCGAAGCAGTTAAAGCAGAAAATGATGCACTCCAAGCTCAGAACCAGAAACTTCATGCTGAGATGTTGGCGCTAAAAAGCAGAGAGCCAACTGAGTCCATCAACCTCAATATTAAAGAAACTGAGGGTTCTTGCAGTAACAGAAGTGAGAACAGTTCTGATATCAAGCTAGACATCTCAAGGACACCAGCAATTGACAGCCCTCTATCCACCCATCCAACCAGCAGACCCCTATTTCCATCATCTATTAGGCCTGCGGAAGAAAGCTTTTGCAACATGTTCTGTGGCATGGACGATCAATCTGGATTTTGGCCATGGCTGGAACAACAGCATTTCAATTGA 768 45.96 MAFFPANFMLQTPREDDHQPPNSLNPILPSCAPQDFHGVASLLGKRSMSFSGIDVCEETNGEDDLSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAVKAENDALQAQNQKLHAEMLALKSREPTESINLNIKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHPTSRPLFPSSIRPAEESFCNMFCGMDDQSGFWPWLEQQHFN* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11304893 11307266 - Vvi1g879 Vvi1g879 770079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g879 255 Pfam Homeobox associated leucine zipper 130 170 IPR003106 GO:0006355|GO:0043565
Vvi1g879 255 Gene3D - 67 136 - -
Vvi1g879 255 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Vvi1g879 255 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
Vvi1g879 255 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Vvi1g879 255 SMART HOX_1 73 134 IPR001356 GO:0003677
Vvi1g879 255 Pfam Homeodomain 75 128 IPR001356 GO:0003677
Vvi1g879 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 255 IPR045224 GO:0003700
Vvi1g879 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 255 - -
Vvi1g879 255 CDD homeodomain 75 131 IPR001356 GO:0003677
Vvi1g879 255 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Vvi1g879 255 Coils Coil 122 170 - -
Vvi1g879 255 SUPERFAMILY Homeodomain-like 64 132 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g879 Vvi14g1511 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14544 PF00046 Homeodomain 2.30E-15 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g879 K09338 - vvi:100241332 509.605