Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g88 ATGAACCCAGATCTAGCTGGAGGGATGGCAGACGGGGCTGTGTCGTTTCTTCTTCAAAAACTTGAAGCTTTTGCAAGTACAGAATGGAACTTGCAGGAAAATATCAGGAATGGAGTCCGTGAGTTACAAAGGGAGCTGTGGAGAATAGAAGCCATGATGAGAGATGCTGATGCAAAGAAAGATTATGATAACCAATTCAACGTGTGGATTCAAGAAGTTCGCACAGAAGCTTATGCCATTGAGGATGTTCTTGACCTGTTCAGACTCCACTGGGATCAAGAATCAGTGTGGCGCCACTTGAAAATTTCGGAAACCAACACATACCATAATGTGAGAGCAGCTCCTTTGATCCTCGGCTGGGGCAATAACACCATGGGCATTGATGAGCCTAAAAGGAAGCTGGTTTCTTGGGCATCAAAGTCGAATCAGAAACTCAAGGTTATGTTCCTAGTGGGGATGGCTGGGTTGGGCAAGACAACGCTTGCCTACCGCGTGTACGAGGAGGTGAAGGAGCACTTTGATTGCCATGCCTGGATCATTGCTTCAAAGTACCAAACCATAGATGAAACCTTACGGAGCTTGTTGGAGGAACTTGGCTCTTCAACAGAGGGGTCCGGCATAGTTCTTCTCATGCAGAGACTGCACAATTTTCTCCAGCACAAACGGTATGTTATAGTTGTTGACAATTTATTGGTAAAAGATGTGTGGGAATCCATTAGACTTGCCTTGCCAGATGGTAACGACAATAGAATAATTATCACTACAAGAAGAGGCGATATAGCTAATTCTTGCAGAGATGATTCTATTGATATCCACAAGGTTCAGCCACTGTCACTGCAATGGGCTGAGCAACTCTTCTATAAGAAAGCTTTCTTAGGAGATGGCAGCTGTCCTTCAGGCTTGGAGGAAGTCTCGAAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAAATCGGTAGGGTCTTGCGGAGTAAGCCTCGTCAAACTAAATACGAGTGGAAAAAATTACATGATAGCCTTGAGTCTGAATTGAGAAGCGGTGGTGCCCTTTCAGATATTATGAGAGTGTTTTCTGCAAGTTACAAGGATTTACCTTACCATCTCAAGTATTGCTTCTTATACATGAGTATTTTTCCTGAGAATAATCCAGTTAAGCGAAGAAGACTGATTCGGCTATGGATAGCTGAGGGATTTGTAACAGAGGAGAGAGGCAAGACTCTTGAAGAGGTGGGGGAAGAGTACCTGAATGAGCTTATTGGCAGGAGTCTGATAAAGGCAAATGAAATGGACTTTGATGGAAGGCCAATAACTGTTGGAGTCCATAGTCTCATGCATAGGATAATTCTCTCAGTTTCACAAGAGGAGAACTTCTGTACTGTTTGTGCAGGACCAGAAGGAAACTTGACTGACAAACCCCGGCGCCTATCCATCCAGACGGGAAACTTTGATGTGTCTCAGGACTTAACCTGTGTTCGAACTTTTTTCAGTTTCAGTACAGGTAGGATAAACATTGGTTCGAATTTCAAACTATTGAAGGTTTTGGACATACAAAGCACTCCTTTGGGAAACTTTCCAAGTGCCATTACAGATCTTGTGCTCTTGAGGTACTTGAGTTTGAGGAATACAAATATAAGGAGCATCCCCAAATCCCTCAGGAACCTACGGCACCTTGAGACCTTGGATCTTAAGCAGACTTTGGTAACAAAGGTACCCAAAGCAGTCCTACAATTGGAGAAACTTCGCCATCTGCTGGTTTATTGCACCAAAGGGGATCGACGCATTGAAGAACCTACAAAAGCTATCATTTGTAAAGGCGAGTGGGCAGCACAGAATGATACAAGGGCTCGACAATCTTACGCAGTTGAGGAAGCTGGGCATTGTAGAACTAGCAGAAGAACATGGGGCGAGTTTGTGCCTCTCAATTGA 1938 43.96 MNPDLAGGMADGAVSFLLQKLEAFASTEWNLQENIRNGVRELQRELWRIEAMMRDADAKKDYDNQFNVWIQEVRTEAYAIEDVLDLFRLHWDQESVWRHLKISETNTYHNVRAAPLILGWGNNTMGIDEPKRKLVSWASKSNQKLKVMFLVGMAGLGKTTLAYRVYEEVKEHFDCHAWIIASKYQTIDETLRSLLEELGSSTEGSGIVLLMQRLHNFLQHKRYVIVVDNLLVKDVWESIRLALPDGNDNRIIITTRRGDIANSCRDDSIDIHKVQPLSLQWAEQLFYKKAFLGDGSCPSGLEEVSKSILQKCDGLPLGIIEIGRVLRSKPRQTKYEWKKLHDSLESELRSGGALSDIMRVFSASYKDLPYHLKYCFLYMSIFPENNPVKRRRLIRLWIAEGFVTEERGKTLEEVGEEYLNELIGRSLIKANEMDFDGRPITVGVHSLMHRIILSVSQEENFCTVCAGPEGNLTDKPRRLSIQTGNFDVSQDLTCVRTFFSFSTGRINIGSNFKLLKVLDIQSTPLGNFPSAITDLVLLRYLSLRNTNIRSIPKSLRNLRHLETLDLKQTLVTKVPKAVLQLEKLRHLLVYCTKGDRRIEEPTKAIICKGEWAAQNDTRARQSYAVEEAGHCRTSRRTWGEFVPLN* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 901076 903566 + Vvi1g88 Vvi1g88 769288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g88 645 PRINTS Disease resistance protein signature 147 162 - -
Vvi1g88 645 PRINTS Disease resistance protein signature 217 231 - -
Vvi1g88 645 PRINTS Disease resistance protein signature 312 326 - -
Vvi1g88 645 PRINTS Disease resistance protein signature 556 572 - -
Vvi1g88 645 Gene3D Ribonuclease Inhibitor 505 604 IPR032675 -
Vvi1g88 645 Gene3D - 120 273 IPR027417 -
Vvi1g88 645 PANTHER - 35 593 - -
Vvi1g88 645 PANTHER DISEASE RESISTANCE PROTEIN RP 35 593 IPR044974 GO:0006952
Vvi1g88 645 SUPERFAMILY L domain-like 444 591 - -
Vvi1g88 645 Gene3D - 365 454 IPR036388 -
Vvi1g88 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 378 IPR027417 -
Vvi1g88 645 Coils Coil 39 59 - -
Vvi1g88 645 Gene3D - 12 112 - -
Vvi1g88 645 Pfam NB-ARC domain 131 366 IPR002182 GO:0043531
Vvi1g88 645 Pfam Rx N-terminal domain 13 95 IPR041118 -
Vvi1g88 645 CDD RX-CC_like 10 91 IPR038005 -
Vvi1g88 645 Gene3D - 277 364 IPR042197 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g88 K13457 - vvi:100256051 1163.67