Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g88 ATGAACCCAGATCTAGCTGGAGGGATGGCAGACGGGGCTGTGTCGTTTCTTCTTCAAAAACTTGAAGCTTTTGCAAGTACAGAATGGAACTTGCAGGAAAATATCAGGAATGGAGTCCGTGAGTTACAAAGGGAGCTGTGGAGAATAGAAGCCATGATGAGAGATGCTGATGCAAAGAAAGATTATGATAACCAATTCAACGTGTGGATTCAAGAAGTTCGCACAGAAGCTTATGCCATTGAGGATGTTCTTGACCTGTTCAGACTCCACTGGGATCAAGAATCAGTGTGGCGCCACTTGAAAATTTCGGAAACCAACACATACCATAATGTGAGAGCAGCTCCTTTGATCCTCGGCTGGGGCAATAACACCATGGGCATTGATGAGCCTAAAAGGAAGCTGGTTTCTTGGGCATCAAAGTCGAATCAGAAACTCAAGGTTATGTTCCTAGTGGGGATGGCTGGGTTGGGCAAGACAACGCTTGCCTACCGCGTGTACGAGGAGGTGAAGGAGCACTTTGATTGCCATGCCTGGATCATTGCTTCAAAGTACCAAACCATAGATGAAACCTTACGGAGCTTGTTGGAGGAACTTGGCTCTTCAACAGAGGGGTCCGGCATAGTTCTTCTCATGCAGAGACTGCACAATTTTCTCCAGCACAAACGGTATGTTATAGTTGTTGACAATTTATTGGTAAAAGATGTGTGGGAATCCATTAGACTTGCCTTGCCAGATGGTAACGACAATAGAATAATTATCACTACAAGAAGAGGCGATATAGCTAATTCTTGCAGAGATGATTCTATTGATATCCACAAGGTTCAGCCACTGTCACTGCAATGGGCTGAGCAACTCTTCTATAAGAAAGCTTTCTTAGGAGATGGCAGCTGTCCTTCAGGCTTGGAGGAAGTCTCGAAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAAATCGGTAGGGTCTTGCGGAGTAAGCCTCGTCAAACTAAATACGAGTGGAAAAAATTACATGATAGCCTTGAGTCTGAATTGAGAAGCGGTGGTGCCCTTTCAGATATTATGAGAGTGTTTTCTGCAAGTTACAAGGATTTACCTTACCATCTCAAGTATTGCTTCTTATACATGAGTATTTTTCCTGAGAATAATCCAGTTAAGCGAAGAAGACTGATTCGGCTATGGATAGCTGAGGGATTTGTAACAGAGGAGAGAGGCAAGACTCTTGAAGAGGTGGGGGAAGAGTACCTGAATGAGCTTATTGGCAGGAGTCTGATAAAGGCAAATGAAATGGACTTTGATGGAAGGCCAATAACTGTTGGAGTCCATAGTCTCATGCATAGGATAATTCTCTCAGTTTCACAAGAGGAGAACTTCTGTACTGTTTGTGCAGGACCAGAAGGAAACTTGACTGACAAACCCCGGCGCCTATCCATCCAGACGGGAAACTTTGATGTGTCTCAGGACTTAACCTGTGTTCGAACTTTTTTCAGTTTCAGTACAGGTAGGATAAACATTGGTTCGAATTTCAAACTATTGAAGGTTTTGGACATACAAAGCACTCCTTTGGGAAACTTTCCAAGTGCCATTACAGATCTTGTGCTCTTGAGGTACTTGAGTTTGAGGAATACAAATATAAGGAGCATCCCCAAATCCCTCAGGAACCTACGGCACCTTGAGACCTTGGATCTTAAGCAGACTTTGGTAACAAAGGTACCCAAAGCAGTCCTACAATTGGAGAAACTTCGCCATCTGCTGGTTTATTGCACCAAAGGGGATCGACGCATTGAAGAACCTACAAAAGCTATCATTTGTAAAGGCGAGTGGGCAGCACAGAATGATACAAGGGCTCGACAATCTTACGCAGTTGAGGAAGCTGGGCATTGTAGAACTAGCAGAAGAACATGGGGCGAGTTTGTGCCTCTCAATTGA 1938 43.96 MNPDLAGGMADGAVSFLLQKLEAFASTEWNLQENIRNGVRELQRELWRIEAMMRDADAKKDYDNQFNVWIQEVRTEAYAIEDVLDLFRLHWDQESVWRHLKISETNTYHNVRAAPLILGWGNNTMGIDEPKRKLVSWASKSNQKLKVMFLVGMAGLGKTTLAYRVYEEVKEHFDCHAWIIASKYQTIDETLRSLLEELGSSTEGSGIVLLMQRLHNFLQHKRYVIVVDNLLVKDVWESIRLALPDGNDNRIIITTRRGDIANSCRDDSIDIHKVQPLSLQWAEQLFYKKAFLGDGSCPSGLEEVSKSILQKCDGLPLGIIEIGRVLRSKPRQTKYEWKKLHDSLESELRSGGALSDIMRVFSASYKDLPYHLKYCFLYMSIFPENNPVKRRRLIRLWIAEGFVTEERGKTLEEVGEEYLNELIGRSLIKANEMDFDGRPITVGVHSLMHRIILSVSQEENFCTVCAGPEGNLTDKPRRLSIQTGNFDVSQDLTCVRTFFSFSTGRINIGSNFKLLKVLDIQSTPLGNFPSAITDLVLLRYLSLRNTNIRSIPKSLRNLRHLETLDLKQTLVTKVPKAVLQLEKLRHLLVYCTKGDRRIEEPTKAIICKGEWAAQNDTRARQSYAVEEAGHCRTSRRTWGEFVPLN* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 901076 903566 + Vvi1g88 Vvi1g88 769288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g88 645 PRINTS Disease resistance protein signature 147 162 - -
Vvi1g88 645 PRINTS Disease resistance protein signature 217 231 - -
Vvi1g88 645 PRINTS Disease resistance protein signature 312 326 - -
Vvi1g88 645 PRINTS Disease resistance protein signature 556 572 - -
Vvi1g88 645 Gene3D Ribonuclease Inhibitor 505 604 IPR032675 -
Vvi1g88 645 Gene3D - 120 273 IPR027417 -
Vvi1g88 645 PANTHER - 35 593 - -
Vvi1g88 645 PANTHER DISEASE RESISTANCE PROTEIN RP 35 593 IPR044974 GO:0006952
Vvi1g88 645 SUPERFAMILY L domain-like 444 591 - -
Vvi1g88 645 Gene3D - 365 454 IPR036388 -
Vvi1g88 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 378 IPR027417 -
Vvi1g88 645 Coils Coil 39 59 - -
Vvi1g88 645 Gene3D - 12 112 - -
Vvi1g88 645 Pfam NB-ARC domain 131 366 IPR002182 GO:0043531
Vvi1g88 645 Pfam Rx N-terminal domain 13 95 IPR041118 -
Vvi1g88 645 CDD RX-CC_like 10 91 IPR038005 -
Vvi1g88 645 Gene3D - 277 364 IPR042197 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g88 K13457 RPM1, RPS3; disease resistance protein RPM1 - vvi:100256051 1163.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g88 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021167 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3