Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g880 ATGATTGCCGCCGGTGTTCAATTTGGTTGGGCCTTGCAGCTTTCCCTATTGACTCCTTATATTCAGACACTTGGAATAGAGCATGCCTTTTCTTCATTTATCTGGCTTTGTGGCCCTATTACAGGCCTTGTGGTTCAGCCTTGTGTTGGGATATGGAGTGACAAGTGCTCTTCAAAATATGGAAGAAGACGACCATTTATTCTTGCTGGGTCTCTAATGATCTCAGTTGCTGTGACAATTATTGGGTTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAGAAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAGGGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAGGTCCTGATCAGCGAAATTCAGCAAATGCCATCTTTTGCTCATGGATGGCTGTGGGAAACATTCTAGGATTTTCTGCTGGTGCTAGTGGACACTGGCATAGATGGTTTCCTTTTCTGTTAAATAAAGCTTGCTGTGAAGCCTGTGGGAATCTTAAAGCAGCATTTCTAATCGCAGTGGTCTTCCTGACTTTGTGTACCCTTGTGACTTTATATTTTGCTGAGGAGGTTCCATTGATGGCATACCAGCCTCACCATTTATCAGACTCTGCGCCTTTATTGGATAATCCTCAACAAATTGGGTTTGATAATTCAAAATCAAAGCTTGATATGTCAGCTGTTGATAATGCCACTGGTAACAACCCTGAGAGCAGTTATGAAATCAATAAAAATGCAAAACATCTCACTCCGATCGTTCAAGAACAAAATGAAAGTTTCAGTGATGGACCTGGAGCAGTATTGGTCAATCTGTTGACAAGCCTAAGGCATTTGCCACCTGCAATGCATTCAGTGCTTCTTGTCATGGCTCTTAGTTGGCTGTCCTGGTTTCCCTTCTTTCTTTTTGATACGGATTGGATGGGTAGAGAAGTTTATCATGGGGATCCTAAAGGGGATGAGTCTGCAGTTAAAGCATATGATGCTGGTGTTAGAGAAGGTGCATTTGGTTTGCTATTGAATTCAGTTGTTCTTGGCATTAGCTCTTTCCTTATTGAACCCATGTGTCAGCGGATGGGGGCAAGGCTGGTTTGGGCCATGAGCAATTTTATTGTGTTTGCCTGCATGGCTGGCACTGCTATTATTAGTCTGGTTTCTGTCAACAAATATATTACTGAAGGGATTCAACATGCAATTGGAGAGAATAGAGCAATCAAGATCGCTTCATTGGTTGTGTTTGCTCTTCTTGGCTTTCCTCTTTCTATTACCTATAGTGTTCCTTTTTCTATCACAGCAGAGTTGACTGCTGATACAGGTGGTGGCCAAGGATTGGCTATTGGAGTTTTGAATCTTGCAATTGTCATTCCTCAGATGATTGTTTCCCTTGGTGCGGGTCCATGGGATGCTTTATTTGGTGGAGGAAACATACCTGCCTTTGTGCTAGCTGCATTGTTTGCCCTAGCAGCTGGTGTTATTGCAATTCTCAAGCTGCCAAACCTTTCGAGTAGTTCGTACAAATCATCTGGTTTTCATTTTGGATAA 1608 42.35 MIAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMISVAVTIIGFSADIGYLLGDTNMDCRKFKGTRTWAAIIFVLGFWMLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGHWHRWFPFLLNKACCEACGNLKAAFLIAVVFLTLCTLVTLYFAEEVPLMAYQPHHLSDSAPLLDNPQQIGFDNSKSKLDMSAVDNATGNNPESSYEINKNAKHLTPIVQEQNESFSDGPGAVLVNLLTSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGDESAVKAYDAGVREGAFGLLLNSVVLGISSFLIEPMCQRMGARLVWAMSNFIVFACMAGTAIISLVSVNKYITEGIQHAIGENRAIKIASLVVFALLGFPLSITYSVPFSITAELTADTGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLAALFALAAGVIAILKLPNLSSSSYKSSGFHFG* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11312667 11322931 - Vvi1g880 Vvi1g880 770080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g880 535 Gene3D MFS general substrate transporter like domains 1 519 IPR036259 -
Vvi1g880 535 SUPERFAMILY MFS general substrate transporter 5 521 IPR036259 -
Vvi1g880 535 Pfam Major Facilitator Superfamily 6 476 IPR011701 GO:0022857|GO:0055085
Vvi1g880 535 PANTHER SUGAR TRANSPORTER 1 535 - -
Vvi1g880 535 CDD MFS_SLC45_SUC 1 498 - -
Vvi1g880 535 PANTHER SUCROSE TRANSPORT PROTEIN SUC3 1 535 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g880 K15378 - vvi:100232845 1041.18