Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g885 ATGTGGAGTAAGGGAGCGTGGATCGTGGGTTTGCTGTGTTTGGCTTTGGCATTTGTTGTGGGTGCTTCTTCGCAAGAACCCCAACTGGGTTCCGCTCGCGTTGTTTTTCAGACCAACTATGGAGACATTGAATTTGGGTTTTTTCCTGGTGTTGCACCCAAAACTGTTGACCACATTTTCAAACTCGTTCGTTTGGGATGCTTTAATACCAACCACTTTTTCCGGGTTGATAGGGGATTTGTTGCCCAAGTGGCAGATGTTGTTGGTGGAAGATCAGCTCCGATGAATGAAGAGCAGCGGGAAGAAGCTGTGAAAACGGTTGTTGGTGAATTCAGTGATGTCAAACATGTGAGAGGTATTCTATCTATGGGGAGGTATGCTGATCCAGACAGTGCCTCATCTTCGTTTTCAATGCTTCTTGGAGATGCTCCTCATCTTGATGGCCAGTATGCAATATTTGGCAGGGTTACTAAAGGTGATGAGACATTGAAAAAGCTTGAGCAACTCCCTACTCGACGTGAGGGGATCTTTGTAATGCCGACTGAGCGCATCACAATTCTGTCTTCGTACTTCTATGATACCAAGATGGAAACTTGTGAACAGGAGAAGTCAACATTGAAACGAAGGCTTGCCGCATCTGTGGTTGAAATTGAAAGACAGAGAATGAAATGCTTCCCGTGA 681 45.52 MWSKGAWIVGLLCLALAFVVGASSQEPQLGSARVVFQTNYGDIEFGFFPGVAPKTVDHIFKLVRLGCFNTNHFFRVDRGFVAQVADVVGGRSAPMNEEQREEAVKTVVGEFSDVKHVRGILSMGRYADPDSASSSFSMLLGDAPHLDGQYAIFGRVTKGDETLKKLEQLPTRREGIFVMPTERITILSSYFYDTKMETCEQEKSTLKRRLAASVVEIERQRMKCFP* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11448689 11455844 - Vvi1g885 Vvi1g885 770085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g885 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 191 IPR002130 GO:0000413|GO:0003755
Vvi1g885 226 Gene3D - 20 200 IPR029000 -
Vvi1g885 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 8 226 IPR044233 -
Vvi1g885 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 8 226 - -
Vvi1g885 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 188 IPR002130 GO:0000413|GO:0003755
Vvi1g885 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Vvi1g885 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Vvi1g885 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Vvi1g885 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Vvi1g885 226 CDD cyclophilin 35 188 - -
Vvi1g885 226 SUPERFAMILY Cyclophilin-like 33 197 IPR029000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g885 - - - vvi:100244863 454.521
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g885 . Blo16g01123 . . Bpe13g01420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0601 Cone9ag0606 . . . . . . . . . . . Bma06g00677 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010068 0 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 2 1 0 1 1 2 1 1 1 1 1 2 1 29