Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g888 ATGGCGGCCAGTATAGGGATGATGGACGCTGCCTATTTCGTGGGTAGGGGTGAGATTTTGTCTTGGATCAACGCCACTCTTCATCTCAATCTCTCCAAGGTTGAGGAGGCGGCATCTGGTGCTGTTCAGTGTCAGATGATGGACATGATTCATCCAGGAGTCGTTCCAATGCACAAGGTTAATTTTGATGCAAAAACGGAGTATGACATGATCCAAAATTACAAAATCCTTCAAGAAGTATTCAACAAGTTAAAAATCGAGAAGCATATCGAGGTCAACAAACTTGTTAAAGGACGGCCTTTGGACAACTTGGAGTTTTTACAATGGCTGAAACGATATTGTGATTCCATGAATGGTGGCATAATGAATGAGAATTATAACCCTGTGGAGCGAAGATGCAAAGGTGGTAAAGAAAGGAACATAAAGGGTTCTTACAAGTCTTCAAAATCATTGCAAGCAAATAACTTATCTAATGTCTCTGACAATGGGATTTGCATTGACGAGAGTTCTGGACCCAAAGGAAGGCATAAAAGTGAGATGTCAGGTGGAGCTAATTCTGTTGGTGAGATTCAAGGATTATGCCAGGAGATTGCGGACCTCAAGCTCTCAGTAGATGATCTGGAGAAAGAACGAGATTTCTATTTTGGAAAATTACGTGACATTGAAATCCTTTGTCAAACTCCTGAGGTGGAGGATCTTCCGATGTCCATGGCAATAAAGAAGATCCTGTACGCTGTGGATGCCAAAGTATCAGCTCTTGGTGAAGCTCAGGAAATCATAACCAAATCTGGTGATGATGCTGATGCTGATGCTGATGCTGATGCCTTGGATGTGCATGACTGA 843 42.47 MAASIGMMDAAYFVGRGEILSWINATLHLNLSKVEEAASGAVQCQMMDMIHPGVVPMHKVNFDAKTEYDMIQNYKILQEVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSMNGGIMNENYNPVERRCKGGKERNIKGSYKSSKSLQANNLSNVSDNGICIDESSGPKGRHKSEMSGGANSVGEIQGLCQEIADLKLSVDDLEKERDFYFGKLRDIEILCQTPEVEDLPMSMAIKKILYAVDAKVSALGEAQEIITKSGDDADADADADALDVHD* 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11514871 11528515 + Vvi1g888 Vvi1g888 770088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g888 280 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1B 1 272 - -
Vvi1g888 280 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Vvi1g888 280 SUPERFAMILY EB1 dimerisation domain-like 189 248 IPR036133 GO:0008017
Vvi1g888 280 Coils Coil 190 210 - -
Vvi1g888 280 Pfam Calponin homology (CH) domain 17 114 IPR001715 GO:0005515
Vvi1g888 280 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 182 252 IPR004953 GO:0008017
Vvi1g888 280 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1 272 IPR027328 GO:0008017
Vvi1g888 280 Gene3D - 6 134 IPR036872 -
Vvi1g888 280 Pfam EB1-like C-terminal motif 207 245 IPR004953 GO:0008017
Vvi1g888 280 Gene3D - 188 269 - -
Vvi1g888 280 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g888 K10436 MAPRE; microtubule-associated protein, RP/EB family - vvi:100244878 530.406
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g888 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008938 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34