Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g889 ATGATCTTTGGTAGTGCTTCATGGGTGAGGCAAAAGTTCCAATCTTGGTCATTGCATCACTTCCCTAAGTACTACTCCACAGCCCCAGAAGATCAAAGCCTCATTTCCCTACTGGAATCTTGCACTCAGACCTCTGAAATCTGTCAAGTCCATGGCTCCATGGTCAAAACTGGCCTTGTCAATGTCCCCTTCACTTTGAGCAAGCTTCTTGCATCTTCCATACAAGACACTGACTATGCAGCCTCAATTTTCAACCAGATTCCAAGTCCAAATCTCTTTATGTTCAATACTATGCTTAGAGGCTATTCAATTAGTCACCATCCAAAACAAGCTTTTGTTGTCTTCAAGGGTTTGAGGGCTCAACAAATGATACTCGACCAGTTTTCCTTCATCCCAACCCTCAAAGCTTGTGCTCGCGAATTGGCTTACGAAACTGGCCAAGGGATTCATGGGGTTGTTGTGAGGTCTGGGCATGGACTGTTTACCAACGTGAAGAATGCACTTTTGCATTTTTATTGTGTTTGTGGGAGAATTGGAGATGCCCATCAGTTGTTTGATGAGATTCCTCCGAAAATTGATTTGGTTTCATGGAACACTTTGTTGGGTGGATATCTCCAGGTGCCCCACCCCACTATGGTCACTTGCTTGTTCGGAGAAATGTGTAGGAAAGATTTAAATGTGGCTACTGCTTTGATTGATATGTACGCAAATGCTGGGTTTATTGATTTAGGGCATAAAATTTTTTATCAAGTCCCCAAAAAGGATGTTGTCTTATGGAATTGTTTGATAGATGGGTATGCAAAAAGTGACCTGTTACAAGAATCATTGTCTCTACTGCAACTAATGAAACGTGAACAAGTGAAACCCAATTCATCTACATTGGTAGGGTTGCTTTCGGCTTGCGCTGCTGCCGGAGCATCGAGTGTAGGCCTATGTATCAGCAACTATGTGGAGGAGGAGCAAATAGCATTGGATGCAGTTCTTGGCACCGCTCTGGTTGATATGTACTGTAAATGTGGGTTCCTCGAGAAGGCTATTGATGTTTTTGAAAGGATGGAAATCAAAGACGTGAAATCTTGGACAGCCATGATTTCAGGTTATGGGGTGCACGGGCAGGCAAAAAATGCCATTATGATCTTTCATAGAATGGAGGTGGAGGGCTATAGGCCTAATGAAGTCACTTTCTTAGCAGTTTTGAATGCTTGTAGCCATGGAGGTATGGTTGTAGAGGGGATAAGTTTCTTAGAGAAAATGGTTCGAGAATATGGCTTTTCCCCAAAGGTTGAACACTATGGATGTATGATTGATCTCTTGGGCCGTGCAGGGTTGCTGGAAGAAGCACATAACCTAATCAAGAGTTTGCCCATTGAGGGCGATGCTACCGGGTGGCGTGCATTGCTTGCAGCTTGCAGGGTGTATGGAAATGTTGACTTGGGAGAATGCGTGAAGAGAGTGCTGTTGGAAATCTTTGATGAGCACCCCACTGATTCCATCCTTCTTTCTAGCACATACGCTATTGCAGGAAGGTTGCCTGATTATACAAGAATGCAGGAGATTAAGGAAGAAAAGATGATGAAGGAAGCTGGATGTAGATATCCTAATGCACAGGATCCAAAATTTTCTTTTTTAGTATCCTCATATTCAGGAACCACGGGAAGAAAAGAAAAACAGGATAAGAACCTTGGACGGAAAAGCATCAGATTTTCTTGA 1710 43.16 MIFGSASWVRQKFQSWSLHHFPKYYSTAPEDQSLISLLESCTQTSEICQVHGSMVKTGLVNVPFTLSKLLASSIQDTDYAASIFNQIPSPNLFMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKACARELAYETGQGIHGVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGYLQVPHPTMVTCLFGEMCRKDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCKCGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAVLNACSHGGMVVEGISFLEKMVREYGFSPKVEHYGCMIDLLGRAGLLEEAHNLIKSLPIEGDATGWRALLAACRVYGNVDLGECVKRVLLEIFDEHPTDSILLSSTYAIAGRLPDYTRMQEIKEEKMMKEAGCRYPNAQDPKFSFLVSSYSGTTGRKEKQDKNLGRKSIRFS* 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11539989 11542757 + Vvi1g889 Vvi1g889 770089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g889 569 Gene3D Tetratricopeptide repeat domain 156 224 IPR011990 GO:0005515
Vvi1g889 569 Gene3D Tetratricopeptide repeat domain 225 309 IPR011990 GO:0005515
Vvi1g889 569 PANTHER - 47 223 - -
Vvi1g889 569 PANTHER - 223 531 - -
Vvi1g889 569 Pfam PPR repeat 195 224 IPR002885 -
Vvi1g889 569 Pfam PPR repeat 93 117 IPR002885 -
Vvi1g889 569 Pfam PPR repeat 166 188 IPR002885 -
Vvi1g889 569 Pfam PPR repeat 430 453 IPR002885 -
Vvi1g889 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Vvi1g889 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Vvi1g889 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 426 IPR002885 -
Vvi1g889 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 355 IPR002885 -
Vvi1g889 569 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 47 223 - -
Vvi1g889 569 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 223 531 - -
Vvi1g889 569 Pfam PPR repeat family 355 403 IPR002885 -
Vvi1g889 569 Pfam PPR repeat family 254 302 IPR002885 -
Vvi1g889 569 Gene3D Tetratricopeptide repeat domain 356 531 IPR011990 GO:0005515
Vvi1g889 569 Gene3D Tetratricopeptide repeat domain 14 150 IPR011990 GO:0005515
Vvi1g889 569 MobiDBLite consensus disorder prediction 552 569 - -
Vvi1g889 569 MobiDBLite consensus disorder prediction 549 569 - -
Vvi1g889 569 TIGRFAM PPR: pentatricopeptide repeat domain 257 290 IPR002885 -
Vvi1g889 569 TIGRFAM PPR: pentatricopeptide repeat domain 330 356 IPR002885 -
Vvi1g889 569 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
Vvi1g889 569 TIGRFAM PPR: pentatricopeptide repeat domain 393 426 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g889 - - - vvi:100255149 1023.46
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g889 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g00235 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014045 0 1 0 0 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 1 22