Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g89 ATGCCTGAGAAATTGGTGGCCCAGCTGAAGAAAAACGGTGGTCAATTTCGCCATTTGGTTCACCATATTCCATACCGAGATATAACCGCGAGTGCAATCCTATCCTATGACTTCCCTTTAGAATCATTTCCACGTAAACACCTTGATTATATATTAAGCTTCCATCAGGTAAATGTACCTGAAGTGATTTTGTATCTTTTGAAGGCTAGCCAGCAGTTGCCTGGTAGAGTGCAAGTCCAGGGTAAACAATGGCTTCTTGGGAACCAAGATCTTCATTCACAAGAACCCAATGACCATGAAAGTCTCGTACAATGTAAAGCCTTCTTTATGATGGGAAATAGCAGAACGATGGAGAGAACGGGCCTCAATGCATCTCACTCACGAGTCATTATAGCCAAAATTGGTTCTTATGTCCTCTTTGCTATACTTCAACCAGCAGATGACCAATGTGGCACTCATAACCGTAGCCAAGAACTGCCCAATTTTACACGCTTCAGGTTGTGCATTCTGGACCCTACACAAACTGACCCATTAACATGCTCGCCACCACCTACATATTTTCTTAATCGTCAAACAGCAAGCAAAGCTGTCCTCAAGCCGCCGGCGGCGAAACGCCTCCGCCATCATCAAAGCACCAGTCCAACCATACCCAAATTTCTTTCTTTGTTGCTTCCTGATGTAAAAGCTCCTCCATCCATGCATCTTATGAAGGTAACAACATCCCATTATCAATCACGACTCAAGCAAAGCCATTCCCGTCATAGCCTTCATTCTCTCTGCATTCCTCATACCCACTCCTCTCTAAACCTTCCCATGCATGCCACTACTCTGTTAATACCCACAAACCCACTGCTCATGGCCGATACTCCCCTCATTACCTTCCCTCACTCATCCATTCTGCCATTAAGTGCTATCACAAAGAGGATGACAGCAATAGAAAAGATGGCTGGAATGGATGTTCTTTGCAGTGACAAGACTGGGACTCTCACCTTCAACAAGCTTATAAGGAAAATTGTTCTCAGGGCCACCCACTTCTCTCACTCGGGCATCAAGAAGCTCTCTCCTGAAGTTGCCCTCCAGACGGGAGAATCCAAAGGCCCTATTTTCCTCTGCCACTCTCAATCCTCGCAGGGCTCCTACGCCAAGCTTCCAAGCAACATCAAGGTGAAGAGAAAGAGCATGAACCCAGATCTAGCTGGAGGGATGGCAGACAGGGCTGAAAGATATGATAACCGATTCAACGTGTGGATTCAAGAAGTTCGCACAGAAGCTTATGCCATTGAGGATGTTCTTGACCTGTTCAGACTCCACTGGGATCAAGAATCAGTGTGGCGCCACTTGAAAATGTGGCACTCCATTAGCAACCTGATACAGGATATTAACACAAGGCTCGCGATCATTAGTGAAGATGTGTGGGAATCCATTAGACTTGCCTTGCCAGATGGTAACGACAATAGAATAATTATCACTACAAGAAGAGGCGATATATCTAATTCTTTCAGAGATGATGATTCTATTGATATCCACAAGGTTCAGCCTCTGTCACCGCATTGGGCTGAGCAACTCTTCTATAAGAAAGCTTTCTCAGGATCTTTGGAGCTTTCTCTTCTCTCCACCTGTAGGGTAGTTGGTTGTGAGCATTGGGCAGTGAGTAGTTTCTTCTCTTGTTTCTCTCTCTCTTCAATCTGCATGGTTTCTTCCATGGCGGGTCTCAGACATCAGCTGGGTCTGTTCCTGGTGGTGGGTATGGTGGTGATGAGGTGTGCGTGGGGGAGGTTCGTGGTGGAGAAGAACAGCATCAGTGTTCTGGCTCCCCTTGATATGCGTTCAAAGCATGATGGGGCGATTGGGAACTTTGGTATTCCTGAATATGGAGGATCCATGGTGGGGTCTGTTGTTTATCCTCAAAAGGGCTCTTTTGGGTGTGTGCCTTTTGAGGGTGACAAGCCCTTCAAGTCTCGCTCCTCTCCCACCACTATTCTTCTTCTTGACCGTGGAGAGTGCTACTTTGCCTTGAAGGCATGGAATGCTCAACAGGCAGGAGCTGCAGCAGTTCTAGTGGCTGATAGCATAGATGAGCCTCTCATAACCATGGATTCTCCAGAGGAGAGCACTGATTCAGACGGCTATGTGGAGAAGCTTAGGATCCCATCAGCCTTAATAGACCGAGCTTTTGGTGAAAATTTGAAGCAGGCCTTGAAGAAAGGTCAAGATGTTTTGGTAAAATTAGACTGGACAGAGTCAATGCCCCACCCAGATGAGAGGGTCGAGTATGAGCTCTGGACTAACAGCAATGATGAGTGTGGGACTCGTTGTGATGAGCAGATGAACTTTGTGCAGAACTTCAAGGGCCACGCCCAGATTCTCGAGAAGCTGGGCTACACTCAATTCACACCACATTATATAACTTGGTACTGTCCTCAAGCTTTTGTCCTTAGCAACCAATGCAAGTCTCAATGCATCAACCATGGAAGGTACTGTGCACCTGATCCAGAGCAAAATTTTGGAGAAGGGTACCAAGGAAAAGATGTGGTGTTTGAGAACTTGAGACAGCTTTGTGTGCATAGGGTTGCCAATGAGAGCAACCGGTCTTGGGTTTGGTGGGACTATGTCACTGATTTTCATATCAGATGTTCAATGAAGGAGAAGAGGTATAGCAAAGAATGCGCTGAGGATGTCATGAAATCACTTGATCTGCCTATTGACAAGATCAAAAAATGCATGGGCAATCCTGAAGCTGATGTGGATAATGAGGTATTGAAAACCGAGCAAGAACTCCAGGTTGGCCGAGGATCTCGTGGTGATGTTACCATCTTGCCAACACTGGTTGTTAATAACATCCAATACCGAGGAAAACTGGAGAGAACTGCTGTGCTGAAGGCCATTTGCGCTGGATTTAAGGAGACCACTGAACCTCAAGTATGTTTAAGTGGAGATCTTGAGACCAATGAGTGCCTTGAAAGGCATGGTGGCTGTTGGCACGATTCACGTTCTAACATAACTGCCTGCAAGGACACATATCGGGGAAGAGTTTGCAAATGCCCAGTTGTGGATGGTGTTCAGTACAGAGGAGATGGTTACGTCTCTTGTGAAGCTTTCGGGCCTGCAAGGTGCGCGATGAACAATGGAGGTTGCTGGTCAGACACCAAAAATGGAAAAACTTTCTCAGCTTGCTCAGATTCTGAGGTAACTGGCTGTCAGTGCCCACATGGCTTCCAAGGAGATGGCCATAAATGTGAAGATGTTAATGAATGCAAGGAACGTCTCGCTTGTCAATGTGACGGTTGCACTTGTAAGAACACATGGGGTGGATATGACTGCAAGTGTAAGGGCAACCTTCTGTACATAATGGAGCAAGATACTTGTATTGAAAGAAGTGGTTCTAAATTCGGATGGTCCCTCGGCTTCTTGGTCCTAGCTGCTCTGGTGGGTGCTGGTATAGCTGGTTATATATTCTACAAATACAGGCTCCGGTCTTACATGGACTCAGAGATCATGGCCATCATGTCACAGTACATGCCTCTTGACAACCACAACAACAACAACGAAGTCCCAACCGAGGCCCAGGCTCTGCGACCAGGCTCATCAGTATGA 3594 46.47 MPEKLVAQLKKNGGQFRHLVHHIPYRDITASAILSYDFPLESFPRKHLDYILSFHQVNVPEVILYLLKASQQLPGRVQVQGKQWLLGNQDLHSQEPNDHESLVQCKAFFMMGNSRTMERTGLNASHSRVIIAKIGSYVLFAILQPADDQCGTHNRSQELPNFTRFRLCILDPTQTDPLTCSPPPTYFLNRQTASKAVLKPPAAKRLRHHQSTSPTIPKFLSLLLPDVKAPPSMHLMKVTTSHYQSRLKQSHSRHSLHSLCIPHTHSSLNLPMHATTLLIPTNPLLMADTPLITFPHSSILPLSAITKRMTAIEKMAGMDVLCSDKTGTLTFNKLIRKIVLRATHFSHSGIKKLSPEVALQTGESKGPIFLCHSQSSQGSYAKLPSNIKVKRKSMNPDLAGGMADRAERYDNRFNVWIQEVRTEAYAIEDVLDLFRLHWDQESVWRHLKMWHSISNLIQDINTRLAIISEDVWESIRLALPDGNDNRIIITTRRGDISNSFRDDDSIDIHKVQPLSPHWAEQLFYKKAFSGSLELSLLSTCRVVGCEHWAVSSFFSCFSLSSICMVSSMAGLRHQLGLFLVVGMVVMRCAWGRFVVEKNSISVLAPLDMRSKHDGAIGNFGIPEYGGSMVGSVVYPQKGSFGCVPFEGDKPFKSRSSPTTILLLDRGECYFALKAWNAQQAGAAAVLVADSIDEPLITMDSPEESTDSDGYVEKLRIPSALIDRAFGENLKQALKKGQDVLVKLDWTESMPHPDERVEYELWTNSNDECGTRCDEQMNFVQNFKGHAQILEKLGYTQFTPHYITWYCPQAFVLSNQCKSQCINHGRYCAPDPEQNFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEDVMKSLDLPIDKIKKCMGNPEADVDNEVLKTEQELQVGRGSRGDVTILPTLVVNNIQYRGKLERTAVLKAICAGFKETTEPQVCLSGDLETNECLERHGGCWHDSRSNITACKDTYRGRVCKCPVVDGVQYRGDGYVSCEAFGPARCAMNNGGCWSDTKNGKTFSACSDSEVTGCQCPHGFQGDGHKCEDVNECKERLACQCDGCTCKNTWGGYDCKCKGNLLYIMEQDTCIERSGSKFGWSLGFLVLAALVGAGIAGYIFYKYRLRSYMDSEIMAIMSQYMPLDNHNNNNEVPTEAQALRPGSSV* 1198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 903665 929421 + Vvi1g89 Vvi1g89 769289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g89 1197 SMART egfca_6 1081 1123 IPR001881 GO:0005509
Vvi1g89 1197 Gene3D - 319 333 IPR023214 -
Vvi1g89 1197 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 578 1171 - -
Vvi1g89 1197 SUPERFAMILY PA domain 651 736 IPR046450 -
Vvi1g89 1197 Pfam NB-ARC domain 408 533 IPR002182 GO:0043531
Vvi1g89 1197 Gene3D - 590 752 - -
Vvi1g89 1197 ProSitePatterns Calcium-binding EGF-like domain signature. 1081 1107 IPR018097 GO:0005509
Vvi1g89 1197 Pfam PA domain 630 729 IPR003137 -
Vvi1g89 1197 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 578 1171 - -
Vvi1g89 1197 Gene3D - 303 318 - -
Vvi1g89 1197 Gene3D Laminin 1036 1123 - -
Vvi1g89 1197 Gene3D - 387 467 - -
Vvi1g89 1197 CDD EGF_CA 1081 1110 - -
Vvi1g89 1197 ProSitePatterns E1-E2 ATPases phosphorylation site. 324 330 IPR018303 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g89 - - vvi:100252664 1314.29