Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g890 ATGGAATCTGGATCTGTTCTGCGCATTCCTAAAGCGAGGAGTAGTAATATACTTCAGAAGTCCAACGAGATAGCAGAAAGAGACACAATGGGTCCTAGAGTACAGGGACAACTGTCCAGACTCTCATCAGTTGACTCATTCAGTCGAGCTGAAAGCAAACATTACAAGTGCGACACAAAGCTAGAATTTAATGATGCTCGTGTCTCTCCCCATCTGAATGGAAATGTTCAGCGGGGAAGCTTCCATTCATCAAAGTTGTCAAATTCTCTATTTGGAGGTTCAAGGAAGATTTTTTCAGCTTCTCGTCCTGGCTCCAGAATAGTTTCTCGGGCAACATCTCCTGTTTCAGGGAAGTCAAGTCCACCTCAGTCTGCAATGCTAGCAGCATCTCTTGCTGTTGTTAGATCTCCTGAAGCAACGGATGATGATCCAAAGCATACAAATGACAGTCTAAGTCGAGAAATCATAAATTTAAGGGCACAGGTAGAAAATCTTACTGGAAAATCGCAAATTCTTGAAGCTGAACTTGAAAGATCATCTAGGAAATTGAAAGAGGTCACTGCTGTAGCGGAAGGTGAAGCTGAAAAATGCAAAGCTGCAAAGGAAGTTATCAAGTCTCTAACTGCACAGTTGAAGGAGATGGCTGAAAGAGTGCCAGAAGAACATATTTCCATTAGTAAATCAGGTTCTAGTGCCAGACAAACTCCTAATATTGTAGATATGTTCTCTAATGAGAACCATTCAACAAGCCTAACCTCTCCTGAGAGCGAGTCCAATGGCAGTTCAGTAAATCCTATCTTGTCCAGTGGAACCAAGGCACAAACTGAAAAGTCAGACTGGGTAGTGCAAGATGAACCAGGCGTGTACCTAACTCTTTCGTCCTTGGCAGGGGGTGGTAATGAACTCAGACGGGTTCGTTTCAGTCGGAAACGCTTCACTGAGGAACAGGCAGAGGTTTGGTGGGCTGAAAATGGGTCCAAAGTATGTGAGCGGCACGACATAAGAAGTGTGGAGTAA 1017 43.95 MESGSVLRIPKARSSNILQKSNEIAERDTMGPRVQGQLSRLSSVDSFSRAESKHYKCDTKLEFNDARVSPHLNGNVQRGSFHSSKLSNSLFGGSRKIFSASRPGSRIVSRATSPVSGKSSPPQSAMLAASLAVVRSPEATDDDPKHTNDSLSREIINLRAQVENLTGKSQILEAELERSSRKLKEVTAVAEGEAEKCKAAKEVIKSLTAQLKEMAERVPEEHISISKSGSSARQTPNIVDMFSNENHSTSLTSPESESNGSSVNPILSSGTKAQTEKSDWVVQDEPGVYLTLSSLAGGGNELRRVRFSRKRFTEEQAEVWWAENGSKVCERHDIRSVE* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11542846 11577704 - Vvi1g890 Vvi1g890 770090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g890 338 MobiDBLite consensus disorder prediction 244 279 - -
Vvi1g890 338 Coils Coil 148 189 - -
Vvi1g890 338 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 332 - -
Vvi1g890 338 Coils Coil 197 217 - -
Vvi1g890 338 ProSiteProfiles BRX domain profile. 278 333 IPR013591 -
Vvi1g890 338 MobiDBLite consensus disorder prediction 18 53 - -
Vvi1g890 338 MobiDBLite consensus disorder prediction 244 277 - -
Vvi1g890 338 Pfam Transcription factor regulating root and shoot growth via Pin3 278 332 IPR013591 -
Vvi1g890 338 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 332 - -
Vvi1g890 338 Pfam Transcription factor BRX N-terminal domain 193 219 IPR027988 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g890 - - - vvi:100250008 640.188
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g00679 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015455 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 0 1 10