Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g891 ATGGCTGATCCGCAGAGAAACGGTCTAGCTGAAAGAGATGTAGAGCAGGCCATTGTAGCTCTTAAGAAAGGTGCATATTTGCTGAAATATGGGCGCAGAGGGAAGCCAAAATTCTGTCCATTCCGACTTTCTAATGACGAATCTATGTTGATATGGTACTCTGGCAAAGAAGAGAAACAGCTTAAACTAAACAATGTTTCAAGAATTATTCCTGGGCAGCGTACTCCAATATTTCAGCGGTATCCTAGGCCAGAAAAAGAATATCAATCATTTTCTCTGATATATGGTGATAGATCATTGGATTTGATTTGTAAAGACAAGGATGAAGCTGAAGTGTGGTTCATCGGTCTTAAGGGATTAATTTCACGTGGTAACTACCGAAAATGGAGAAGTGAAATAAGAGATGATAGTATATCATCGGAGAGTCCACATAGTCGTGCTCGAAGAATTTCTCCATCTCTTTCATCATCCGATCCAGGAGATACTCAACAAACTCAGGTTACTTTTGAGAATATTCCACAGAGTGGGTTGGGAAAGGCATTCTCTGACGTAATATCATATACTGCATCAACCAAGAGCTTTACTCAAGCTGAATCAGTAGCCAGTTCTCTCAGCTCACTGTCATCTGGTGGTGTGGATAACTCAAATGGCCGAACTTCTGCATCTGAGAACTTTCGAGTTAGTTTATCTAGTGCTGTGAGCTCATCAAGTCAGGGTTCTGGTCATGATGATTTTGATGCCCTGGGTGATGTTTTCATGTGGGGGGAAGGCATTGGAGATGGGATTATGGGTGCTGGTGTGCATAGAGTTGGGAGTTCATCTAGTACCAAGATAGATGCCCTTCTGCCCAAGGCATTAGAGTCAACAGTGGTGCTTGATGTTCATAGTATTGCTTGCGGTGGTAAGCATGCTGTGTTAGTCACCAAAAAAGGCGAAGTTTTTAGTTGGGGGGAAGAGTGTGGAAGCAGGCTTGGGCATGGAGTAGAAGTGGATGTTTCCCACCCAAAGCTCATTGATGCCCTTTGTGGCATGAACATTGAACTAGTTGCATGTGGAGAGTATCACAGTTGTGCCGTTACACTTTCTGGGGATCTTTATACATGGGGAGATGGTACTCACAATTCTGGTCTTCTTGGGCATGGAAGTGAGGCTAGTCACTGGATCCCTAAAAAAGTAAGTCAGTTATTTACATTTGGCGATGGAACTTTTGGTGCCCTGGGCCATGGAGATCATAGTAGCATGAGTATTCCAAGAGAAGTGGAAGCTTTGAGAGGACAGCTCTTCTGGTAG 1290 43.57 MADPQRNGLAERDVEQAIVALKKGAYLLKYGRRGKPKFCPFRLSNDESMLIWYSGKEEKQLKLNNVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYGDRSLDLICKDKDEAEVWFIGLKGLISRGNYRKWRSEIRDDSISSESPHSRARRISPSLSSSDPGDTQQTQVTFENIPQSGLGKAFSDVISYTASTKSFTQAESVASSLSSLSSGGVDNSNGRTSASENFRVSLSSAVSSSSQGSGHDDFDALGDVFMWGEGIGDGIMGAGVHRVGSSSSTKIDALLPKALESTVVLDVHSIACGGKHAVLVTKKGEVFSWGEECGSRLGHGVEVDVSHPKLIDALCGMNIELVACGEYHSCAVTLSGDLYTWGDGTHNSGLLGHGSEASHWIPKKVSQLFTFGDGTFGALGHGDHSSMSIPREVEALRGQLFW* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11577723 11584830 - Vvi1g891 Vvi1g891 770091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g891 429 Gene3D - 189 428 IPR009091 -
Vvi1g891 429 Pfam Regulator of chromosome condensation (RCC1) repeat 362 393 IPR000408 -
Vvi1g891 429 Pfam Regulator of chromosome condensation (RCC1) repeat 310 359 IPR000408 -
Vvi1g891 429 Pfam Regulator of chromosome condensation (RCC1) repeat 394 426 IPR000408 -
Vvi1g891 429 Gene3D - 12 128 IPR011993 -
Vvi1g891 429 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 393 426 - -
Vvi1g891 429 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 393 - -
Vvi1g891 429 MobiDBLite consensus disorder prediction 134 164 - -
Vvi1g891 429 SUPERFAMILY PH domain-like 13 121 - -
Vvi1g891 429 CDD PH_PLC_plant-like 12 122 - -
Vvi1g891 429 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 311 362 IPR000408 -
Vvi1g891 429 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 393 - -
Vvi1g891 429 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 393 426 - -
Vvi1g891 429 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 297 307 IPR000408 -
Vvi1g891 429 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 363 419 IPR000408 -
Vvi1g891 429 MobiDBLite consensus disorder prediction 144 164 - -
Vvi1g891 429 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 310 IPR000408 -
Vvi1g891 429 SUPERFAMILY RCC1/BLIP-II 248 425 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g891 - - - vvi:100250008 798.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g891 Vvi17g533 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g891 . . . Bda11g01223 Bpe13g01417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01223 . . . . . . . . . . . . Cpe07g00205 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008880 1 4 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32