Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g896 ATGGGCAGTCAGAAGAAGAGGAATTTTCAAATAGAGGCGTTCAAGCATCGGGTGGTGGTGGATCCCAAGTACGCCGACAAGACTTGGAAGATATTGGAGCATGCAATCCATGAGATATATAATCACAACGCTAGTGGTCTTAGTTTTGAAGAGCTTTATAGGAATGCTTACAATATGGTACTGCACAAATTTGGTGAGAAGTTGTACTCAGGGCTGGTTTCAACTATGACTTCACATCTCAAAGACATATCAAAGTTTATAGAGGCTGCTCAGGGAGGTTTGTTTCTGGAGGAGCTGAATAGAAAGTGGGCAGATCATAACAAGGCATTGCAAATGATACGAGACATACTAATGTACATGGACAGGACTTTCATACCAAGTACTCATAAAACCCCTGTTCATGAGCTTGGGCTGAATCTGTGGAGGGACAACATTATCCACTCCAGCAAAATCCAAACAAGGCTACTAAATACACTCCTTGAACTAGTACTCAGAGAACGTAATGGTGAAGTCATAAACCGTGGACTGATGAGGAATATAATTAAAATGCTAATGGATTTGGGTTCTTCTGTCTATCAGGAAGACTTTGAAAAGCCTTTCCTTGAGGTTTCAGCTGATTTCTACAGGGTTGAGTCTCAGAAGTTTATTGAGTGCTGTGATTGTGCAGACTACCTGAAGAAAGCTGAAAGACGGCTAAACGAAGAAATGGAAAGGGTATCCCAGTACTTGGATGCCAAGAGTGAAGTCAAGATCACTAATGTGGTGGAGAAGGAGATGATTGCAAACCACATGCTGAGGCTAGTTCATATGGAGAACTCAGGTTTGGTAAACATGCTTCTTGATGATAAATATGATGACCTAGGAAGAATGTACAACTTGTTCCGCCGGGTTCCAAATGGCCTTTCAACAATACGAGAGGTGATGACCTCTCATATCAGGGACACTGGTAAGCATCTTGTTACTGATCCTGAAAGGTTGAGGGATCCTGTAGAATTTGTTCAACGCCTCTTGGATGAAAAAGATAATGAGGAGGATGTGGAGATTATCCTTGATAAGGTGATGATGCTGTTCCGCTACTTGCAGGAGAAAGACGTATTTGAGAAGTATTATAAACAGCATTTGGCAAAACGACTCCTGTCTGGAAAAACTGTTTCTGATGATGCAGAGAGAAGTCTGATAGTTAAGCTCAAGACAGAGTCCCATGGTGCTGACTTAGGGGATGGCCCTACGCTGGCTGTCACCGTTTTGACAACAGGGTCTTGGCCTACTCAGCCCAGCATCACCTGCAACCTGCCTACTGAAATGTTGGCTCTCTGTGAGAAGTTCCGGTCATATTACCTTGGGACCCATACTGGTCGGAGATTGACCTGGCAAACTAACATGGGAACAGCTGATATAAAAGCAACTTTTGCTAAGGGCCAGAAGCATGAGCTACACGTGTCCACTTACCAAATGTGTGTTCTTATGCTGTTTAACAATGCTGATCGGCTAAGCTACAAGGAGATTGAGCAGGCAACAGAGATCCCTGCTTCAGATTTGAAGAGGTGCATGCAATCCATGGCTTGTGTAAAAGGTAAAAATGTTCTTCGGAAAGAGCCCATGAGCAAAGATATTGGTGAAGATGATGTATTTTTCGTTAATGACAAATTCACTAATAAACTCTATAAGGTGAAGATAGGAACTGTAGTTGCACAAAAGGAAACAGAGCCTGAAAAACAGGAAACCAGGCAAAGAGTAGAGGAGGATAGGAAGCCACAGATTGAGGCTGCCATAGTGAGGATCATGAAATCGAGGAGGGTACTGGATCATAACAATCTTATTGCTGAGGTGACAAAGCAGTTGCAGTCTCGGTTCCTGGCCAATCCTGTAGAAATTAAAAAACGGATCGAGTCCCTTATTGAACGTGATTTCTTGGAGAGAGACAATGTGGATAGGAAGTTGTACCGATACCTTGCCTGA 1959 43.03 MGSQKKRNFQIEAFKHRVVVDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTSHLKDISKFIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDNIIHSSKIQTRLLNTLLELVLRERNGEVINRGLMRNIIKMLMDLGSSVYQEDFEKPFLEVSADFYRVESQKFIECCDCADYLKKAERRLNEEMERVSQYLDAKSEVKITNVVEKEMIANHMLRLVHMENSGLVNMLLDDKYDDLGRMYNLFRRVPNGLSTIREVMTSHIRDTGKHLVTDPERLRDPVEFVQRLLDEKDNEEDVEIILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTESHGADLGDGPTLAVTVLTTGSWPTQPSITCNLPTEMLALCEKFRSYYLGTHTGRRLTWQTNMGTADIKATFAKGQKHELHVSTYQMCVLMLFNNADRLSYKEIEQATEIPASDLKRCMQSMACVKGKNVLRKEPMSKDIGEDDVFFVNDKFTNKLYKVKIGTVVAQKETEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNLIAEVTKQLQSRFLANPVEIKKRIESLIERDFLERDNVDRKLYRYLA* 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11680567 11687175 + Vvi1g896 Vvi1g896 770096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g896 652 ProSiteProfiles Cullin family profile. 321 521 IPR016158 -
Vvi1g896 652 SMART Cullin_Nedd8_2 579 646 IPR019559 -
Vvi1g896 652 SUPERFAMILY Cullin homology domain 340 560 IPR036317 -
Vvi1g896 652 Gene3D - 564 652 IPR036388 -
Vvi1g896 652 Gene3D Cullin Repeats 15 144 - -
Vvi1g896 652 Gene3D Cullin Repeats 330 407 - -
Vvi1g896 652 SUPERFAMILY Winged helix DNA-binding domain 563 652 IPR036390 -
Vvi1g896 652 PANTHER CULLIN-3A-RELATED 403 652 - -
Vvi1g896 652 PANTHER CULLIN-3A-RELATED 3 342 - -
Vvi1g896 652 PANTHER CULLIN-3A-RELATED 342 399 - -
Vvi1g896 652 Gene3D Cullin Repeats 145 264 - -
Vvi1g896 652 Gene3D - 267 316 - -
Vvi1g896 652 Pfam Cullin protein neddylation domain 582 642 IPR019559 -
Vvi1g896 652 Gene3D Cullin; Chain C, Domain 2 409 563 - -
Vvi1g896 652 PANTHER CULLIN 403 652 IPR045093 -
Vvi1g896 652 PANTHER CULLIN 3 342 IPR045093 -
Vvi1g896 652 PANTHER CULLIN 342 399 IPR045093 -
Vvi1g896 652 Pfam Cullin family 29 341 IPR001373 GO:0006511|GO:0031625
Vvi1g896 652 Pfam Cullin family 410 550 IPR001373 GO:0006511|GO:0031625
Vvi1g896 652 SMART cul_2 351 470 IPR016158 -
Vvi1g896 652 Coils Coil 225 245 - -
Vvi1g896 652 SUPERFAMILY Cullin repeat-like 22 344 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g896 K03869 CUL3; cullin 3 - vvi:100265464 1245.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g896 Vvi14g1520 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g896 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003578 1 4 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 5 1 2 47