Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g897 ATGGAGGCTTGTGTAGCTAGATGTTCGGATGGCGTGTTCTTCAGATGCCTTAATCGTTTCAATTTTAGGCGTTCTTTCAAGCCAATGGCGTCCATCCATGCAGCCTCAGATGGAGGAAGGTGGTTTAACAGAGCATACGATGGATTGTTGTTGGATGCTGGGGGTACACTCCTGCAGTTGGCAAAGCCTGTCGAAAGCACTTATGCCGATATTGGCAGGAAATACGGTTTGACTGCAAGCTCAGCAGAAATAAAGCAAGGATTTAGGAGAGCTTTTGCTGCTCCATGGCCTGAAAAGCTTCGCTACCAGGGTGATGGGCGACCATTTTGGAAACTTGTCGTTTCTGAAGCCACTGGTTGTGCAAATAATGATTATTTTGAAGAAGTATATGAGTACTATGCAAATGGTGATGCATGGCATCTTCCAACTGGAGCTTCTGAAACAATGTTCCTTCTCAAAGATGCTGGAGTTAAGCTAGCCGTTGTATCCAACTTTGACACCCGCTTAAGAAAGCTATTGAAGGACCTCAATGTTTTAGATCTGTTTGATGCTGTTATCATATCTTCAGAGGTTGGATATGAGAAACCAGATGCAAAAATATTTAAAGCTGCTTTGGATCAAATTGGAGTAGAGGCAGGGAAAGCAGTTCATGTTGGAGATGATCAAGAGGCTGATAAGGTGGGGGCTAGTGCTGTTGGGATTGATTGCTGGTTATGGGGAACTGATGTAAAGACATTCTCAGACATACAAAAGCAAATCCTCATTTCAGAGCATTAG 777 43.63 MEACVARCSDGVFFRCLNRFNFRRSFKPMASIHAASDGGRWFNRAYDGLLLDAGGTLLQLAKPVESTYADIGRKYGLTASSAEIKQGFRRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCANNDYFEEVYEYYANGDAWHLPTGASETMFLLKDAGVKLAVVSNFDTRLRKLLKDLNVLDLFDAVIISSEVGYEKPDAKIFKAALDQIGVEAGKAVHVGDDQEADKVGASAVGIDCWLWGTDVKTFSDIQKQILISEH* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11714600 11721062 - Vvi1g897 Vvi1g897 770097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g897 258 Gene3D - 50 240 IPR023214 -
Vvi1g897 258 SUPERFAMILY HAD-like 46 245 IPR036412 -
Vvi1g897 258 SFLD Haloacid Dehalogenase 49 241 - -
Vvi1g897 258 PANTHER - 1 257 - -
Vvi1g897 258 Gene3D - 62 134 IPR044924 -
Vvi1g897 258 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 49 241 - -
Vvi1g897 258 Pfam Haloacid dehalogenase-like hydrolase 121 236 IPR041492 -
Vvi1g897 258 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 49 238 IPR011949 -
Vvi1g897 258 PANTHER F14L17.7 PROTEIN 1 257 - -
Vvi1g897 258 CDD HAD_dREG-2_like 145 254 - -
Vvi1g897 258 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 150 233 IPR006439 -
Vvi1g897 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 46 57 IPR006439 -
Vvi1g897 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 152 165 IPR006439 -
Vvi1g897 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 182 198 IPR006439 -
Vvi1g897 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 200 220 IPR006439 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g897 - - - vvi:100255046 518.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g897 . Blo16g01120 . Bda11g01221 Bpe13g01415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0595 Cone9ag0598 . . . . . . . Bda11g01221 . . . . . . . . . . . . Cpe07g00653 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006918 1 1 1 0 1 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 2 1 32