Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g9 ATGGGAAGAGGGAAGGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGACAGGTGACATTTGCAAAAAGAAGGAATGGACTGCTGAAGAAGGCCTATGAGCTTTCAGTTTTGTGTGATGCTGAGGTTGCGCTCATCATTTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCGGCTCTAGCATGCCAGAGACACTTGAGAGGTATCAAAGATGCAGTTACAGTGCACTGGAAGCCAGCCAACCTGCAAAGGAGACACAGAACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAACGAACTCAGAGAAATTTTCTGGGGGAAGATTTGGGGCATTTGGGTACAAAGGAGCTTGAGCAGCTTGAGCATCAGCTGGACAAGTCATTGAAGCAAATCAGATCAACAAAGACCCAATTTATGCTTGATCAACTGTCTGATCTTCAAAGAAAGGAACAAATCCTAATGGAAGCCAACAACGCCTTAAGGAGGAAGTTGGGTGAAAGCAGTGCAGAAAGTGGCCTGGGATCAACATGGGAAGCTGCCGCACATAATCTACCATATAATCGCGAGCCTGTTCAGTCAGAGGACTTTTTCGAGCCTCTGCAATGCGATAGCACTTTGCAGATTGGTTACAATCCTGTGCTGCGGGTTGAGATGAACGGAGCCAGCACAACACAAAATGTCAATGGATTCATCCCTGGGTGGATGGTTTGA 732 46.45 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGSSMPETLERYQRCSYSALEASQPAKETQNSYQEYLKLKSKVEVLQRTQRNFLGEDLGHLGTKELEQLEHQLDKSLKQIRSTKTQFMLDQLSDLQRKEQILMEANNALRRKLGESSAESGLGSTWEAAAHNLPYNREPVQSEDFFEPLQCDSTLQIGYNPVLRVEMNGASTTQNVNGFIPGWMV* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 194106 206538 - Vvi1g9 Vvi1g9 769209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g9 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g9 243 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Vvi1g9 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi1g9 243 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Vvi1g9 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi1g9 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi1g9 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi1g9 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi1g9 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi1g9 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi1g9 243 Coils Coil 124 144 - -
Vvi1g9 243 PANTHER MADS-BOX PROTEIN 16 1 220 - -
Vvi1g9 243 PANTHER MADS BOX PROTEIN 1 220 - -
Vvi1g9 243 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g9 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi1g9 243 Coils Coil 150 173 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g9 Vvi17g438 ECH
Vvi1g9 Vvi14g996 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14547 PF01486 K-box 6.30E-30 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g9 K09264 - vvi:100232936 476.478