Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g90 ATGAGAACCAAAGAGGGTAAAAGTAGGCAGTTCGCATTTATTGGGTTTCGGACTGAGCAGGAAGCTGAAGAAGCTCTGAAATTCTTCAACAACTCGTACCTTGATACTTGCAGAATTACCTGTGAGATTGCTCGTAAGGTAGGGGATCCAGACATCCCTCGTCCATGGAGTCGATATTCTTTGAAGAAAGAAGATAAATCAACTGAAGTGGAGAAGAAAGATAGGGGTACTAAAAATTCGAGCCATGTGGGTTCTAAAGGAGAGAAATCGAAAAAGGGCAGTGAGAATGATGATCCTCAGCTTCAGGAGTTTCTTCAGGTTATGCAACCAAGGGTTAAGTCGAAAATGTGGGCAAATGATACATTGGGAGTTCCCCCTCTTGATCATAATGGCAAAAACAGTGACAAGCAGACTCAATCTATGAGGGAAGGCAGAGATGAGGCAGTTCAAATGCAAGCTGATTTAGATGAATCTGATGAAAGAGAAGATGAGTTATCAGACAGTCAGATGGATACGAAACCTAACAATCTAGCTCATGATGAAGTCATTTCAGACATGGATTACTTCAAGAGTAGAAAAAGCAAGGTTGATGATGAGGACCATTCTGAAGAATCTGATGGTGAAAGGATGGACTCAGGGAACCCATTGTTAAGTTCAAAAGATGGGAAAGATGTTCTTGAGACTGGTCGGCTTTTTGTCCGTAATCTTCCATATACTGCAACTGAGGATGAACTTGAGGAGCTCTTTAGCAAATTTGGCAATGTATCACAGGTTCATCTTGTTGTGAATAAAGATACAAAACGATCAAAGGGAATTGCCTATGTTCTTTTCACACTTCCTGAATCTGCAGTGAGGGCATTGGAAGAATTAGACAATTCAATTTTCCAAGGCAGATTATTGCACGTCATGCCAGCGAGAGAAAAAAAACCTTCTGAGAAACAGGAGGCCAATGCTTCTGCAAGCCAATCTTCAAAAACTTTAAAGCAAAAGAGGGAGGAGGAAAAGAAGGCATCGGAAGCTAGTGGTGATACACGAGCATGGAACAGTTTGTTTATGCGCACTGATACAGTTGTTGAAAATATCGCTAGGAAATATGGTATAAGTAAAAGTGATTTACTTGACTCACAAGCCGATGATCTCGCCGTACGTATTGCATTGGGAGAAACTCAAGTGATAGCGGAGACAAAGAAGGCTCTTATAAATGCTGGAGTAAATATAGCCTCTTTAGAGGAATTTGTTGCTGGGAAAACTGAGGGTGCAAAGAGAAGCAACCACATTCTACTAGTGAAGAACTTGCCTTATGGTTCATCTGAAGGTGAACTAGCTAAAATGTTTGGGAAATATGGGAGTTTGGACAAAATTATTCTTCCTCCGACAAAAACATTAGCCTTGGTGGTTTTCCTTGAACCAGCGGAAGCTCGTGCTGCTTTCAGAGGTTTAGCATACAAGCGTTACAAGGATGCACCATTATATTTGGAATGGGCTCCTGGAAATATTCTCAGTCAAAATGCACCTTATGAGAATGATGCAAGTAGAAGTGTCATTGTTGGTGAACGTGATGTCAAGAGGATGTTACTAGAACAACAGGTGGAAGGAATATCAGATGTGGATATTGATCCTGATAGAGTTGAGTCACGGTCCCTGTTTGTCAAGAACCTAAATTTTAAGACGTCTGGTGAGAGTTTGAGAAAGCATTTTAGTGAACACATGAAGGAGGGAAAAATCCGAAGTGTCAGGGTGAAGGAGCACTTGAAAAATGGGAAGAATGTGTCAATGGGTTTTGGTTTTATAGAGTTTGATTCAGTTGAGACAGCAGTCAATGTTTGCAGCAATTTACAGGGTACTGTTCTGGATGGTCATGCTCTCATCCTGCAACTATGTCGTGCGAAGAAGGATGAACAAGTGCTGAAAAAGGTTGATAAGGATAAGAGTTCAACAAAATTAATTGTGAGAAATGTTGCTTTTGAGGCAACAGAGAAAGATCTGAGACAGTTGTTTAGTCCATTTGGCCAGATCAAGAGCTTAAGACTTCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCATTTGTTGAATTTGTCACAAAGCAAGAGGCACAGAATGCTCTGCAAGCTCTTTCAAGCACTCATCTGTACGGTCGGCATCTGGTCATGGAGAGAGCCAAGGAAGGTGAGAGCTTGGAAGAATTACGGGCTAGAACAGCTGCTCAGTTTACAGATCAGAATCCGACCAAGTTATCCAGGAAAAGGAAGCACATGGCCGCATTGGATGAAGGCACTGTTAAGTTTGAGAGGATTGCAGATTAG 2304 41.58 MRTKEGKSRQFAFIGFRTEQEAEEALKFFNNSYLDTCRITCEIARKVGDPDIPRPWSRYSLKKEDKSTEVEKKDRGTKNSSHVGSKGEKSKKGSENDDPQLQEFLQVMQPRVKSKMWANDTLGVPPLDHNGKNSDKQTQSMREGRDEAVQMQADLDESDEREDELSDSQMDTKPNNLAHDEVISDMDYFKSRKSKVDDEDHSEESDGERMDSGNPLLSSKDGKDVLETGRLFVRNLPYTATEDELEELFSKFGNVSQVHLVVNKDTKRSKGIAYVLFTLPESAVRALEELDNSIFQGRLLHVMPAREKKPSEKQEANASASQSSKTLKQKREEEKKASEASGDTRAWNSLFMRTDTVVENIARKYGISKSDLLDSQADDLAVRIALGETQVIAETKKALINAGVNIASLEEFVAGKTEGAKRSNHILLVKNLPYGSSEGELAKMFGKYGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPGNILSQNAPYENDASRSVIVGERDVKRMLLEQQVEGISDVDIDPDRVESRSLFVKNLNFKTSGESLRKHFSEHMKEGKIRSVRVKEHLKNGKNVSMGFGFIEFDSVETAVNVCSNLQGTVLDGHALILQLCRAKKDEQVLKKVDKDKSSTKLIVRNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGSHRGFAFVEFVTKQEAQNALQALSSTHLYGRHLVMERAKEGESLEELRARTAAQFTDQNPTKLSRKRKHMAALDEGTVKFERIAD* 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 930400 945147 - Vvi1g90 Vvi1g90 769290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g90 767 SUPERFAMILY RNA-binding domain, RBD 532 632 IPR035979 GO:0003676
Vvi1g90 767 MobiDBLite consensus disorder prediction 135 155 - -
Vvi1g90 767 Gene3D - 638 747 IPR012677 -
Vvi1g90 767 Gene3D - 416 510 IPR012677 -
Vvi1g90 767 CDD RRM5_RBM19_like 546 627 IPR034423 -
Vvi1g90 767 CDD RRM4_RBM19_RRM3_MRD1 425 496 - -
Vvi1g90 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 425 497 IPR000504 GO:0003723
Vvi1g90 767 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 742 - -
Vvi1g90 767 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 742 - -
Vvi1g90 767 MobiDBLite consensus disorder prediction 306 341 - -
Vvi1g90 767 Gene3D - 1 100 IPR012677 -
Vvi1g90 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 46 IPR000504 GO:0003723
Vvi1g90 767 SUPERFAMILY RNA-binding domain, RBD 642 724 IPR035979 GO:0003676
Vvi1g90 767 SMART rrm2_1 230 303 IPR003954 GO:0003676
Vvi1g90 767 SMART rrm2_1 647 718 IPR003954 GO:0003676
Vvi1g90 767 Coils Coil 313 333 - -
Vvi1g90 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 648 715 IPR000504 GO:0003723
Vvi1g90 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 548 622 IPR000504 GO:0003723
Vvi1g90 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 301 IPR000504 GO:0003723
Vvi1g90 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 427 488 IPR000504 GO:0003723
Vvi1g90 767 SMART rrm1_1 647 718 IPR000504 GO:0003723
Vvi1g90 767 SMART rrm1_1 547 625 IPR000504 GO:0003723
Vvi1g90 767 SMART rrm1_1 230 303 IPR000504 GO:0003723
Vvi1g90 767 SMART rrm1_1 426 493 IPR000504 GO:0003723
Vvi1g90 767 CDD RRM3_RBM19_RRM2_MRD1 230 303 - -
Vvi1g90 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
Vvi1g90 767 MobiDBLite consensus disorder prediction 178 210 - -
Vvi1g90 767 CDD RRM6_RBM19_RRM5_MRD1 646 720 - -
Vvi1g90 767 SUPERFAMILY RNA-binding domain, RBD 4 52 IPR035979 GO:0003676
Vvi1g90 767 MobiDBLite consensus disorder prediction 48 222 - -
Vvi1g90 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 646 722 IPR000504 GO:0003723
Vvi1g90 767 SUPERFAMILY RNA-binding domain, RBD 422 519 IPR035979 GO:0003676
Vvi1g90 767 MobiDBLite consensus disorder prediction 48 98 - -
Vvi1g90 767 SUPERFAMILY RNA-binding domain, RBD 225 312 IPR035979 GO:0003676
Vvi1g90 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 546 629 IPR000504 GO:0003723
Vvi1g90 767 MobiDBLite consensus disorder prediction 326 341 - -
Vvi1g90 767 Gene3D - 511 637 IPR012677 -
Vvi1g90 767 Gene3D - 128 318 IPR012677 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g90 K14787 - vvi:100247562 1353.58