Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g90 ATGAGAACCAAAGAGGGTAAAAGTAGGCAGTTCGCATTTATTGGGTTTCGGACTGAGCAGGAAGCTGAAGAAGCTCTGAAATTCTTCAACAACTCGTACCTTGATACTTGCAGAATTACCTGTGAGATTGCTCGTAAGGTAGGGGATCCAGACATCCCTCGTCCATGGAGTCGATATTCTTTGAAGAAAGAAGATAAATCAACTGAAGTGGAGAAGAAAGATAGGGGTACTAAAAATTCGAGCCATGTGGGTTCTAAAGGAGAGAAATCGAAAAAGGGCAGTGAGAATGATGATCCTCAGCTTCAGGAGTTTCTTCAGGTTATGCAACCAAGGGTTAAGTCGAAAATGTGGGCAAATGATACATTGGGAGTTCCCCCTCTTGATCATAATGGCAAAAACAGTGACAAGCAGACTCAATCTATGAGGGAAGGCAGAGATGAGGCAGTTCAAATGCAAGCTGATTTAGATGAATCTGATGAAAGAGAAGATGAGTTATCAGACAGTCAGATGGATACGAAACCTAACAATCTAGCTCATGATGAAGTCATTTCAGACATGGATTACTTCAAGAGTAGAAAAAGCAAGGTTGATGATGAGGACCATTCTGAAGAATCTGATGGTGAAAGGATGGACTCAGGGAACCCATTGTTAAGTTCAAAAGATGGGAAAGATGTTCTTGAGACTGGTCGGCTTTTTGTCCGTAATCTTCCATATACTGCAACTGAGGATGAACTTGAGGAGCTCTTTAGCAAATTTGGCAATGTATCACAGGTTCATCTTGTTGTGAATAAAGATACAAAACGATCAAAGGGAATTGCCTATGTTCTTTTCACACTTCCTGAATCTGCAGTGAGGGCATTGGAAGAATTAGACAATTCAATTTTCCAAGGCAGATTATTGCACGTCATGCCAGCGAGAGAAAAAAAACCTTCTGAGAAACAGGAGGCCAATGCTTCTGCAAGCCAATCTTCAAAAACTTTAAAGCAAAAGAGGGAGGAGGAAAAGAAGGCATCGGAAGCTAGTGGTGATACACGAGCATGGAACAGTTTGTTTATGCGCACTGATACAGTTGTTGAAAATATCGCTAGGAAATATGGTATAAGTAAAAGTGATTTACTTGACTCACAAGCCGATGATCTCGCCGTACGTATTGCATTGGGAGAAACTCAAGTGATAGCGGAGACAAAGAAGGCTCTTATAAATGCTGGAGTAAATATAGCCTCTTTAGAGGAATTTGTTGCTGGGAAAACTGAGGGTGCAAAGAGAAGCAACCACATTCTACTAGTGAAGAACTTGCCTTATGGTTCATCTGAAGGTGAACTAGCTAAAATGTTTGGGAAATATGGGAGTTTGGACAAAATTATTCTTCCTCCGACAAAAACATTAGCCTTGGTGGTTTTCCTTGAACCAGCGGAAGCTCGTGCTGCTTTCAGAGGTTTAGCATACAAGCGTTACAAGGATGCACCATTATATTTGGAATGGGCTCCTGGAAATATTCTCAGTCAAAATGCACCTTATGAGAATGATGCAAGTAGAAGTGTCATTGTTGGTGAACGTGATGTCAAGAGGATGTTACTAGAACAACAGGTGGAAGGAATATCAGATGTGGATATTGATCCTGATAGAGTTGAGTCACGGTCCCTGTTTGTCAAGAACCTAAATTTTAAGACGTCTGGTGAGAGTTTGAGAAAGCATTTTAGTGAACACATGAAGGAGGGAAAAATCCGAAGTGTCAGGGTGAAGGAGCACTTGAAAAATGGGAAGAATGTGTCAATGGGTTTTGGTTTTATAGAGTTTGATTCAGTTGAGACAGCAGTCAATGTTTGCAGCAATTTACAGGGTACTGTTCTGGATGGTCATGCTCTCATCCTGCAACTATGTCGTGCGAAGAAGGATGAACAAGTGCTGAAAAAGGTTGATAAGGATAAGAGTTCAACAAAATTAATTGTGAGAAATGTTGCTTTTGAGGCAACAGAGAAAGATCTGAGACAGTTGTTTAGTCCATTTGGCCAGATCAAGAGCTTAAGACTTCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCATTTGTTGAATTTGTCACAAAGCAAGAGGCACAGAATGCTCTGCAAGCTCTTTCAAGCACTCATCTGTACGGTCGGCATCTGGTCATGGAGAGAGCCAAGGAAGGTGAGAGCTTGGAAGAATTACGGGCTAGAACAGCTGCTCAGTTTACAGATCAGAATCCGACCAAGTTATCCAGGAAAAGGAAGCACATGGCCGCATTGGATGAAGGCACTGTTAAGTTTGAGAGGATTGCAGATTAG 2304 41.58 MRTKEGKSRQFAFIGFRTEQEAEEALKFFNNSYLDTCRITCEIARKVGDPDIPRPWSRYSLKKEDKSTEVEKKDRGTKNSSHVGSKGEKSKKGSENDDPQLQEFLQVMQPRVKSKMWANDTLGVPPLDHNGKNSDKQTQSMREGRDEAVQMQADLDESDEREDELSDSQMDTKPNNLAHDEVISDMDYFKSRKSKVDDEDHSEESDGERMDSGNPLLSSKDGKDVLETGRLFVRNLPYTATEDELEELFSKFGNVSQVHLVVNKDTKRSKGIAYVLFTLPESAVRALEELDNSIFQGRLLHVMPAREKKPSEKQEANASASQSSKTLKQKREEEKKASEASGDTRAWNSLFMRTDTVVENIARKYGISKSDLLDSQADDLAVRIALGETQVIAETKKALINAGVNIASLEEFVAGKTEGAKRSNHILLVKNLPYGSSEGELAKMFGKYGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPGNILSQNAPYENDASRSVIVGERDVKRMLLEQQVEGISDVDIDPDRVESRSLFVKNLNFKTSGESLRKHFSEHMKEGKIRSVRVKEHLKNGKNVSMGFGFIEFDSVETAVNVCSNLQGTVLDGHALILQLCRAKKDEQVLKKVDKDKSSTKLIVRNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGSHRGFAFVEFVTKQEAQNALQALSSTHLYGRHLVMERAKEGESLEELRARTAAQFTDQNPTKLSRKRKHMAALDEGTVKFERIAD* 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 930400 945147 - Vvi1g90 Vvi1g90 769290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g90 767 SUPERFAMILY RNA-binding domain, RBD 532 632 IPR035979 GO:0003676
Vvi1g90 767 MobiDBLite consensus disorder prediction 135 155 - -
Vvi1g90 767 Gene3D - 638 747 IPR012677 -
Vvi1g90 767 Gene3D - 416 510 IPR012677 -
Vvi1g90 767 CDD RRM5_RBM19_like 546 627 IPR034423 -
Vvi1g90 767 CDD RRM4_RBM19_RRM3_MRD1 425 496 - -
Vvi1g90 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 425 497 IPR000504 GO:0003723
Vvi1g90 767 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 742 - -
Vvi1g90 767 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 742 - -
Vvi1g90 767 MobiDBLite consensus disorder prediction 306 341 - -
Vvi1g90 767 Gene3D - 1 100 IPR012677 -
Vvi1g90 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 46 IPR000504 GO:0003723
Vvi1g90 767 SUPERFAMILY RNA-binding domain, RBD 642 724 IPR035979 GO:0003676
Vvi1g90 767 SMART rrm2_1 230 303 IPR003954 GO:0003676
Vvi1g90 767 SMART rrm2_1 647 718 IPR003954 GO:0003676
Vvi1g90 767 Coils Coil 313 333 - -
Vvi1g90 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 648 715 IPR000504 GO:0003723
Vvi1g90 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 548 622 IPR000504 GO:0003723
Vvi1g90 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 301 IPR000504 GO:0003723
Vvi1g90 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 427 488 IPR000504 GO:0003723
Vvi1g90 767 SMART rrm1_1 647 718 IPR000504 GO:0003723
Vvi1g90 767 SMART rrm1_1 547 625 IPR000504 GO:0003723
Vvi1g90 767 SMART rrm1_1 230 303 IPR000504 GO:0003723
Vvi1g90 767 SMART rrm1_1 426 493 IPR000504 GO:0003723
Vvi1g90 767 CDD RRM3_RBM19_RRM2_MRD1 230 303 - -
Vvi1g90 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
Vvi1g90 767 MobiDBLite consensus disorder prediction 178 210 - -
Vvi1g90 767 CDD RRM6_RBM19_RRM5_MRD1 646 720 - -
Vvi1g90 767 SUPERFAMILY RNA-binding domain, RBD 4 52 IPR035979 GO:0003676
Vvi1g90 767 MobiDBLite consensus disorder prediction 48 222 - -
Vvi1g90 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 646 722 IPR000504 GO:0003723
Vvi1g90 767 SUPERFAMILY RNA-binding domain, RBD 422 519 IPR035979 GO:0003676
Vvi1g90 767 MobiDBLite consensus disorder prediction 48 98 - -
Vvi1g90 767 SUPERFAMILY RNA-binding domain, RBD 225 312 IPR035979 GO:0003676
Vvi1g90 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 546 629 IPR000504 GO:0003723
Vvi1g90 767 MobiDBLite consensus disorder prediction 326 341 - -
Vvi1g90 767 Gene3D - 511 637 IPR012677 -
Vvi1g90 767 Gene3D - 128 318 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g90 K14787 MRD1, RBM19; multiple RNA-binding domain-containing protein 1 - vvi:100247562 1353.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g90 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00874 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008976 1 1 1 1 1 0 2 0 0 1 0 0 2 1 1 1 0 2 2 0 1 1 1 1 1 0 1 1 7 1 32