Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g909 ATGCATGAACACAAAACCTCAACGTGGGCTCATGCCAAATCATGTAATTTCTTAAGAAGGCCAAGGCTATTTGCTACTGATTCCACCAGCACTAGGATGATGACAAGGCTGCTAAGCAGTTTTCCAATTCAAATTTTTATATTAAAGAAACTGCGCATCTCTCCCAAATCTTATCGTTGTCTCTTTAAAATATTTATTTCCTTGAATCTTCCAAATACAATATGCACCACACCAATTGAGGAAGGAAGAGAATCAATGGAGAAGCAAAGTGAAGTGAAGTTGTTTGGGACATGGTCTAGTGGCTACTGCACCAGAATTAAGTTAGCTCTCAAACTCAAGGGCATACCCTACGAGTACGTAGAAGAAGACCTATCTAACAAGAGCGACTTGCTGATTCACCACAATCCTGTCCACAAGAAGGTGCCCGTACTCGTCCACAATGGGAAAGCCATTGCAGAATCGCTTGTCATCCTTGAATACATTGATGAGCACTGGAACCACACTCCCAAATTGTTGCCGGAGGATCCATATGAGAAAGCCAAAGTTAGATTCTGGGCCAACTTTTATGATCAGAAGTTTAAGCCAAGTATCTACAACATCATGACTTCCAAAGGCAAAGAGCAAGAAAAAGCCATAGAGGACTCCCGTGAGGTGCTTAAGGTGTTTGAAGAAGGCAGAGAGAGAGATTTCCCAGCAAAATCTCCATTCTTGAATGGAGGCCCCTTGGGATTCCTCGATATTGTGGTGGGATCAAGTGCTTGCAATTACAAAGCTATGAATGAGGTAGTTGGTGTGGTTGTCGACCCCAAAAAGAACCCTGCATTTTGCTATTGGATGACTGCGATGAAAGACTGCCCACTGATGAAGGAGACCCTCCCACCTCATGATCGCCTGGTTGCCAAGATGAGATCCAAATTCTCTCTGCAGCCACCTAAAACTTGA 942 43.52 MHEHKTSTWAHAKSCNFLRRPRLFATDSTSTRMMTRLLSSFPIQIFILKKLRISPKSYRCLFKIFISLNLPNTICTTPIEEGRESMEKQSEVKLFGTWSSGYCTRIKLALKLKGIPYEYVEEDLSNKSDLLIHHNPVHKKVPVLVHNGKAIAESLVILEYIDEHWNHTPKLLPEDPYEKAKVRFWANFYDQKFKPSIYNIMTSKGKEQEKAIEDSREVLKVFEEGRERDFPAKSPFLNGGPLGFLDIVVGSSACNYKAMNEVVGVVVDPKKNPAFCYWMTAMKDCPLMKETLPPHDRLVAKMRSKFSLQPPKT* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11949626 11958474 + Vvi1g909 Vvi1g909 770109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g909 313 CDD GST_N_Tau 92 165 - -
Vvi1g909 313 Pfam Glutathione S-transferase, N-terminal domain 91 163 IPR004045 -
Vvi1g909 313 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 86 305 - -
Vvi1g909 313 SUPERFAMILY GST C-terminal domain-like 163 306 IPR036282 -
Vvi1g909 313 CDD GST_C_Tau 176 303 IPR045074 GO:0004364|GO:0006749
Vvi1g909 313 SFLD Main.3: Omega- and Tau-like 88 305 IPR045073 -
Vvi1g909 313 Gene3D Glutaredoxin 86 171 - -
Vvi1g909 313 ProSiteProfiles Glutaredoxin domain profile. 80 179 - -
Vvi1g909 313 SUPERFAMILY Thioredoxin-like 92 194 IPR036249 -
Vvi1g909 313 SFLD Glutathione Transferase (cytosolic) 88 305 IPR040079 -
Vvi1g909 313 Gene3D - 172 312 - -
Vvi1g909 313 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 90 169 IPR004045 -
Vvi1g909 313 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 86 305 IPR045073 -
Vvi1g909 313 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 175 313 IPR010987 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g909 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - vvi:100260235 485.723
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g909 Vvi17g546 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g909 . . . . . . Bma14g01643 . . Cmo18g01176 . Cma18g01154 . Car18g01063 . . . . . . . . . . Cla05g02445 Cam05g2631 Cec05g2664 Cco05g2702 Clacu05g2634 Cmu05g2488 Cre05g2601 . . . . Lsi04g00429 . . Cme10g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012942 0 1 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 28