Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g91 ATGGCCTCTTCTCCTCTTCTCCACCACCCAACCCACTGCTTCATCTCCAGTAACCAGGGTTTCTGCAATGGGTTGTCTTCATCACGACCCAACTACTCTTGGATGCGCGGCTCTGGAAATAACATTAGACCCATCAAAGCTGCCGTAGAGATGCCTCCTTTTCCACTCTTTGAACCTCCACAAATTGAAAGTGACACACCTTCTCAGTTGGAGCCTGCAGACCCTGATTTCTACAAGATAGGGTATGTTCGGAGTGTTCGAGCATACGGTGTTGAATTCAAGGAAGGGCCTGATGGATTTGGAGTCTATGCCTCTAAAGATGTTGAACCACTTCGCAGAGCAAGGATGATCATGGAAATTCCACTGGAATTGATGTTAACAATAAGAAAAAAGCTCCCATGGATGTTTTTCCCAGACATCGTACCAGTGGGACATCCTATATTTGATATTATCAACTCAACCAATCCGGAGACAGATTGGGATCTGCGGTTAGCATGCCTTCTTTTGTTTGCATTTGATCAAGAGGATAACTTCTGGCAGCTATATGGTGATTTTTTACCTAGTGAAGGAGAGTGCACTAGCTTGCTTCTAGCTAAAGAGGAGGACCTTTTGGAGCTGCAGGATCCGAAATTGGCTTCAACTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGATTCATTTGGGCAGTGAGTATAGCACAATCACGATGCATAAACATGCAAATGAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTGACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCAAGGACCGCATGCTTGAGGTGATGATAAATGCTGGACAAAGGATTAAGAAAGGGGAGGAGATGACTGTCAATTACATGAGTGGGCTGAAAAATGACATGTTAATGCAAAGATATGGTTTTTCATCCCCTGTGAATCCTTGGGATGTCATCCAGTTCTCTGGAAATGCACAGATTCATTTGGACTCCTTCTTGTCAGTCTTCAATATATCTGGCCTTCCTGAAGAATATTATCATAACAGTCGGTTATCTAATAATGGAGATAGTTTTGTTGATGGAGCGGTAATAGCAGCAGCAAGAACATTGCCCACTTGGTCAGATGGGGATGTGCCTCCAATGCCAAGCATGGAGCGGAAAGCTGTGAAGCAGTTACAAGAAGAATGTCAACAGATGCTTTTGGAATTCCCCACAACTTCGGAGCAAGATCAAAAAATTCTAGATTCTATGACAGAAGAAAGGAGAACACTTGAAGCTGCAATCAAGTACAGATTGCACAGGAAGTTGCTGATAGAGAAGGTCATCCAGGCATTGGACATTTACCAAGAGCGGATATTGTTTTGA 1449 43.41 MASSPLLHHPTHCFISSNQGFCNGLSSSRPNYSWMRGSGNNIRPIKAAVEMPPFPLFEPPQIESDTPSQLEPADPDFYKIGYVRSVRAYGVEFKEGPDGFGVYASKDVEPLRRARMIMEIPLELMLTIRKKLPWMFFPDIVPVGHPIFDIINSTNPETDWDLRLACLLLFAFDQEDNFWQLYGDFLPSEGECTSLLLAKEEDLLELQDPKLASTMRDQQRRASEFWEKNWHSGVPLKIKRLARDPNRFIWAVSIAQSRCINMQMRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMINAGQRIKKGEEMTVNYMSGLKNDMLMQRYGFSSPVNPWDVIQFSGNAQIHLDSFLSVFNISGLPEEYYHNSRLSNNGDSFVDGAVIAAARTLPTWSDGDVPPMPSMERKAVKQLQEECQQMLLEFPTTSEQDQKILDSMTEERRTLEAAIKYRLHRKLLIEKVIQALDIYQERILF* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 949656 957893 + Vvi1g91 Vvi1g91 769291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g91 482 Gene3D - 356 479 IPR036464 -
Vvi1g91 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 479 IPR036464 -
Vvi1g91 482 CDD SET_LSMT 90 337 - -
Vvi1g91 482 SUPERFAMILY SET domain 98 338 IPR046341 -
Vvi1g91 482 Pfam SET domain 99 322 IPR001214 GO:0005515
Vvi1g91 482 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Vvi1g91 482 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
Vvi1g91 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 50 475 - -
Vvi1g91 482 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 50 475 - -
Vvi1g91 482 Pfam Rubisco LSMT substrate-binding 411 463 IPR015353 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g91 - - - vvi:100264713 979.163
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g91 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011766 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14549 PF00856 SET 5.90E-20 No_clan Vvi TR