Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g91 ATGGCCTCTTCTCCTCTTCTCCACCACCCAACCCACTGCTTCATCTCCAGTAACCAGGGTTTCTGCAATGGGTTGTCTTCATCACGACCCAACTACTCTTGGATGCGCGGCTCTGGAAATAACATTAGACCCATCAAAGCTGCCGTAGAGATGCCTCCTTTTCCACTCTTTGAACCTCCACAAATTGAAAGTGACACACCTTCTCAGTTGGAGCCTGCAGACCCTGATTTCTACAAGATAGGGTATGTTCGGAGTGTTCGAGCATACGGTGTTGAATTCAAGGAAGGGCCTGATGGATTTGGAGTCTATGCCTCTAAAGATGTTGAACCACTTCGCAGAGCAAGGATGATCATGGAAATTCCACTGGAATTGATGTTAACAATAAGAAAAAAGCTCCCATGGATGTTTTTCCCAGACATCGTACCAGTGGGACATCCTATATTTGATATTATCAACTCAACCAATCCGGAGACAGATTGGGATCTGCGGTTAGCATGCCTTCTTTTGTTTGCATTTGATCAAGAGGATAACTTCTGGCAGCTATATGGTGATTTTTTACCTAGTGAAGGAGAGTGCACTAGCTTGCTTCTAGCTAAAGAGGAGGACCTTTTGGAGCTGCAGGATCCGAAATTGGCTTCAACTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGATTCATTTGGGCAGTGAGTATAGCACAATCACGATGCATAAACATGCAAATGAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTGACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCAAGGACCGCATGCTTGAGGTGATGATAAATGCTGGACAAAGGATTAAGAAAGGGGAGGAGATGACTGTCAATTACATGAGTGGGCTGAAAAATGACATGTTAATGCAAAGATATGGTTTTTCATCCCCTGTGAATCCTTGGGATGTCATCCAGTTCTCTGGAAATGCACAGATTCATTTGGACTCCTTCTTGTCAGTCTTCAATATATCTGGCCTTCCTGAAGAATATTATCATAACAGTCGGTTATCTAATAATGGAGATAGTTTTGTTGATGGAGCGGTAATAGCAGCAGCAAGAACATTGCCCACTTGGTCAGATGGGGATGTGCCTCCAATGCCAAGCATGGAGCGGAAAGCTGTGAAGCAGTTACAAGAAGAATGTCAACAGATGCTTTTGGAATTCCCCACAACTTCGGAGCAAGATCAAAAAATTCTAGATTCTATGACAGAAGAAAGGAGAACACTTGAAGCTGCAATCAAGTACAGATTGCACAGGAAGTTGCTGATAGAGAAGGTCATCCAGGCATTGGACATTTACCAAGAGCGGATATTGTTTTGA 1449 43.41 MASSPLLHHPTHCFISSNQGFCNGLSSSRPNYSWMRGSGNNIRPIKAAVEMPPFPLFEPPQIESDTPSQLEPADPDFYKIGYVRSVRAYGVEFKEGPDGFGVYASKDVEPLRRARMIMEIPLELMLTIRKKLPWMFFPDIVPVGHPIFDIINSTNPETDWDLRLACLLLFAFDQEDNFWQLYGDFLPSEGECTSLLLAKEEDLLELQDPKLASTMRDQQRRASEFWEKNWHSGVPLKIKRLARDPNRFIWAVSIAQSRCINMQMRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMINAGQRIKKGEEMTVNYMSGLKNDMLMQRYGFSSPVNPWDVIQFSGNAQIHLDSFLSVFNISGLPEEYYHNSRLSNNGDSFVDGAVIAAARTLPTWSDGDVPPMPSMERKAVKQLQEECQQMLLEFPTTSEQDQKILDSMTEERRTLEAAIKYRLHRKLLIEKVIQALDIYQERILF* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 949656 957893 + Vvi1g91 Vvi1g91 769291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g91 482 Gene3D - 356 479 IPR036464 -
Vvi1g91 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 479 IPR036464 -
Vvi1g91 482 CDD SET_LSMT 90 337 - -
Vvi1g91 482 SUPERFAMILY SET domain 98 338 IPR046341 -
Vvi1g91 482 Pfam SET domain 99 322 IPR001214 GO:0005515
Vvi1g91 482 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Vvi1g91 482 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
Vvi1g91 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 50 475 - -
Vvi1g91 482 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 50 475 - -
Vvi1g91 482 Pfam Rubisco LSMT substrate-binding 411 463 IPR015353 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14549 PF00856 SET 5.90E-20 No_clan Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g91 - - vvi:100264713 979.163