Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g910 ATGGAACATTCTTCGATTTCGCTCTCCCCAAATACACCAAAACAGACAAATAGGCGAAGAGAATCAATGGAGAAGCAAAGTGAAGTGAAGTTGTTTGGGACATGGGCTAGTGTCTACTGCACCAGAATTGAGTTGGCTCTCAAACTCAAGGGCATACCCTACGAGTATGTAGAGGAAGACTTACCTAACAAGAGCGACTTGCTAATTCACCACAATCCTGTGCACAAGAAGGTCCCTGTGCTCGTCCACAACGGGAAAGCCATTGCAGAATCGCTTGTCATCCTTGAATACATTGATGAGCACTGGAACCACACTCCCAAATTGTTGCCAGCGGATCCATATGAGAGAGCCAAAGTTAGATTCTGGGCCAACTTTTATGATCAGAAGTTTGGTCCAAGTATTTACAACATCATGACTTCCAAAGGCAAAGAGCAAGAAAAAGCCATAGAGGACTCCCTTGAGGTGCTTAAGGTGTTTGAAGAAGGCATAGAGAGAGACTTCCCAGCAAAATCTCCATTCTTGAATGGAGGCACCTTGGGATTTCTCGATATTGTAGTGGGATCAAGTTCTTGCAATTTCAAAGCTTTTAATGAGGTATTTGCTGTGGTTTTCGACCCAGAGAAGAACCCTGCATTCTGCTCTTGGGTGACCGCTATGAAAGAATGCCCACTGATGAAGGAGACCCTCCCACCTCATGACCGTCTGGTTGCCAAGATATCCAAATTATTTCTGCAGCCACCTAAAGCTTGA 750 44.93 MEHSSISLSPNTPKQTNRRRESMEKQSEVKLFGTWASVYCTRIELALKLKGIPYEYVEEDLPNKSDLLIHHNPVHKKVPVLVHNGKAIAESLVILEYIDEHWNHTPKLLPADPYERAKVRFWANFYDQKFGPSIYNIMTSKGKEQEKAIEDSLEVLKVFEEGIERDFPAKSPFLNGGTLGFLDIVVGSSSCNFKAFNEVFAVVFDPEKNPAFCSWVTAMKECPLMKETLPPHDRLVAKISKLFLQPPKA* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11958853 11975969 + Vvi1g910 Vvi1g910 770110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g910 249 Gene3D - 109 247 - -
Vvi1g910 249 MobiDBLite consensus disorder prediction 1 25 - -
Vvi1g910 249 SFLD Glutathione Transferase (cytosolic) 25 242 IPR040079 -
Vvi1g910 249 Pfam Glutathione S-transferase, N-terminal domain 28 100 IPR004045 -
Vvi1g910 249 MobiDBLite consensus disorder prediction 1 16 - -
Vvi1g910 249 CDD GST_N_Tau 29 102 - -
Vvi1g910 249 CDD GST_C_Tau 113 242 IPR045074 GO:0004364|GO:0006749
Vvi1g910 249 SFLD Main.3: Omega- and Tau-like 25 242 IPR045073 -
Vvi1g910 249 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 23 240 - -
Vvi1g910 249 SUPERFAMILY Thioredoxin-like 29 131 IPR036249 -
Vvi1g910 249 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 112 249 IPR010987 -
Vvi1g910 249 Gene3D Glutaredoxin 23 108 - -
Vvi1g910 249 SUPERFAMILY GST C-terminal domain-like 100 241 IPR036282 -
Vvi1g910 249 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 27 106 IPR004045 -
Vvi1g910 249 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 23 240 IPR045073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g910 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - vvi:100263691 469.929
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g910 Vvi17g547 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g910 . . . . . . . . . . . . . . . Cpe09g00176 . . . . . . . . . . . . . . . . . . . . . Chy10g00997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012942 0 1 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 28