Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g914 ATGAAGAAGTGTGAAGTGGTGATAAAAGGAGCAAAGGAACAAGGCAAAAGTTCTTCTAGTTCATCTGTCACCTTGAAGAGTATCAGCTATGGACAGTGCCAAAAGAACCATGCTGCTAAATCCGGAGGGTATGCAGTAGACGGGTGCAGAGAGTTCATGGCAAGTGGAGAGGAAGGAACGCGCGAAGCCCTCAAATGCGCTGCCTGCGGCTGCCACCGCAACTTCCATAGAAGGGAAGTGGATGCTGATCAATCCTATGGAAAGATGATGAAGATGATTTTGTTGATGATGGTCATCAAAACTACAAGTCTTCTCATTGTGGTTGCTGTCGCCATTGATATTGTTGAGACCATTGGTGGTGGCAAAGCTAATTATAGTGTCATGACCGTCGTTATTGTTGTTGTTATTGCTGCTAATATCTCTCTTACCAAAAGTGTGCTTGTTGTTGTGCATCCAAACCTTGAGCACCCCTTTGCCAACACCAACTTCATTGCAGAACTCTTCAACCAAACCCTCATCGCTCTTCTGCATCTTCCACCCCAATTTTTCAGAGAACGAGAACATCTTCTCCTTCTGCTCTTGACTGAACTTGGTGCGAAACCGCTTTCTTCCATTTGGGATGTCCTGCCTCGTCACCTAGTATGA 645 45.58 MKKCEVVIKGAKEQGKSSSSSSVTLKSISYGQCQKNHAAKSGGYAVDGCREFMASGEEGTREALKCAACGCHRNFHRREVDADQSYGKMMKMILLMMVIKTTSLLIVVAVAIDIVETIGGGKANYSVMTVVIVVVIAANISLTKSVLVVVHPNLEHPFANTNFIAELFNQTLIALLHLPPQFFREREHLLLLLLTELGAKPLSSIWDVLPRHLV* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12038069 12043051 + Vvi1g914 Vvi1g914 770114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g914 214 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Vvi1g914 214 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 85 - -
Vvi1g914 214 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 85 - -
Vvi1g914 214 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Vvi1g914 214 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 30 80 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g914 - - - pop:7482471 123.635
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g914 Vvi14g1543 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g914 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02894 . . . . Car15g00270 Cpe13g00948 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070032 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14550 PF04770 ZF-HD_dimer 5.00E-29 No_clan Vvi TF