Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g917 ATGGCCACTGCGGGGTTGAGGAGGCTGGAATTGCGTGTCCAGGAAGCGATTCTGGAGTCTTGTAGACGGGTTCTTCGGGTATCAAGTTTTCAATTTCGGGACAGTTGGGCTTCTGTTATTACTGGGTCGGATGAAGGAATATATGCTTGGGTTGTTGCAAATCATGCACTTGGCAGTCTTGGAGGTGATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAGGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTAGATTTGGGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATGGCTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAGGGTATTCTTTGGATGGAAAAAATGAATACTCATCTGCTATTCATGCCCAGGGTAACTTCTCAGAGTGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAGAGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAGTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGACAACATTTCTGTGAAGAGGATTGGTCAAAGTTGAAAAGGAAGTATTATTCATTCAATGAGGAAGATTTATTGCACTATTGCTTCTCTTCAGCATATATTGTGGCTTTTCTTCATGATAGTCTTGGAATTGCTTTGGATGATGAAAGGATTGGATACGCAAATCAGGTGGGAGATATCCCACTGGATTGGGCCTTAGGAGCTTTCATCTTGCAGAGCACAACCAACTTGGAAGCAGAGCACTCTGATTGGATCACCACGGTTGTCAGTGATGAGTCCCCAACCTTGCTCTCTCTAGTTGTCATCTTAATCATATTGATGTTTACAGTTTGGTCTATATCAAAGTGTAAGAAGCCCCAGTTGAAGACGATCTATGATTTAGAGAAAGGACGGTATATAGTCACTCGAATCAATAGATGTTCATAG 1122 42.42 MATAGLRRLELRVQEAILESCRRVLRVSSFQFRDSWASVITGSDEGIYAWVVANHALGSLGGDPRETTGIIELGGASAQVTFVSSEPVPPEFSHTLRFGNVTYNLYSHSLLDFGQNVALESLQKSLFSTDLMAAESLQKGILIDPCTPKGYSLDGKNEYSSAIHAQGNFSECRAAALTLLQKGKERCSYHHCLGSTFMPKLQGKFLATENFFYTSKFFGLGSRAFLSDLTVAGQHFCEEDWSKLKRKYYSFNEEDLLHYCFSSAYIVAFLHDSLGIALDDERIGYANQVGDIPLDWALGAFILQSTTNLEAEHSDWITTVVSDESPTLLSLVVILIILMFTVWSISKCKKPQLKTIYDLEKGRYIVTRINRCS* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12090745 12106439 - Vvi1g917 Vvi1g917 770117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g917 373 Pfam GDA1/CD39 (nucleoside phosphatase) family 2 305 IPR000407 GO:0016787
Vvi1g917 373 Gene3D Exopolyphosphatase. Domain 2 41 290 - -
Vvi1g917 373 PANTHER APYRASE 6-RELATED 1 367 - -
Vvi1g917 373 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 1 367 IPR000407 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g917 K01510 ENTPD1_3_8, CD39; apyrase [EC:3.6.1.5] - vvi:100244785 747.658
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g917 . Blo16g01115 . Bda11g01215 Bpe13g01410 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0583 Cone9ag0586 . . . . . . . Bda11g01215 . . . Bma06g00686 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006326 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 2 1 1 38