Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g918 ATGGAGGGTCAGAAAATAGAGAGCATGGAGAGCCAAAACCAGCTCCCACAACAGCAGTTGAGCAGAGGCACCACCTTCCTCAGGACTTGCTTCAATGGTATCAATGCCTTATCAGGTGTTGGGATATTATCAATTCCATATGCTCTTTCCCAAGGAGGGTGGCTGAGCCTCATACTTCTATTTCTCGTAGCCATTCTCTGTTGGTATACGGGGCTTCTTCTACGACGATGCATGGATGCACACCCACTTATCAAAACATATCCCGATGTAGGCGAACTAGCTTTTGGGATGAAAGGGAGAACCATGATAGCTCTGTTTATGTACCTGGAGCTGTATTTAGTTGCAGTAGAATTTCTAATATTAGAAGGTGATAATTTGGAGAAGTTGTTCCCAACCATGAGTTTTAAAGTAGCAGGCCTGAAGATTGGAGGAAGACAAGGCTTTGTTCTTCTAGCTGCCCTTGTGATCTTGCCAACTACGTGGCTGAGGAGTTTGGGGTTACTAGCCTATCTTTCAGCTGGTGGGGTTTTTGCTTCAGTGATTGTGGTTGGTTGTGTTTTCTGGGCAGGTGCAGTTGATGGTGTAGGATTCCATGAAAGGGGTATGGTTCTGAATTGGAGTGGGCTGCCAACTACCATAAGCTTGTTTGTCTTCTGTTATTGTGGTCATGCAATTTTTCCCACACTCTGCACTTCCATGAAGGACAAAAGCCAATTCTCCAAGGTTCTACTAATCTGCTTTGCTCTAAGCACAATCAACTATGGATCAATGGCCATTCTAGGCTACCTGATGTTTGGAGAAAATCTGAGGTCTCAAGTGACTCTAAATCTTCCAACGGGAAAAATGAGTTCCAAACTAGCAATATATACAACACTAATCAATCCCCTGACCAAGTATGGGATAATAATTACTCCAATTGCCAATGCTATTGAGGACACATTTTCATTCCACAACAGCCGACCCATCAGTATCACCATCAGAACAGCGCTGGTGATCAGCACTGTCGTCGTGGCCCTAACAGTCCCATTTTTCGGCTATATAATGGAATTTATTGGTGCATTTCTGAGTGTGACTGTCTCAATGTTGTTCCCATGCGTATTTTACCTTAAGATTAACAAAGCTTCTCGAAGTTTTGGGTTAGAATTGATTGCTATCATTGCCATTTTGGCACTGGGCTCCTTCGTTGCTGTAACGGGTACTTATACTTCTCTCAGACAAATTATAAACCGCCTCTGA 1236 43.53 MEGQKIESMESQNQLPQQQLSRGTTFLRTCFNGINALSGVGILSIPYALSQGGWLSLILLFLVAILCWYTGLLLRRCMDAHPLIKTYPDVGELAFGMKGRTMIALFMYLELYLVAVEFLILEGDNLEKLFPTMSFKVAGLKIGGRQGFVLLAALVILPTTWLRSLGLLAYLSAGGVFASVIVVGCVFWAGAVDGVGFHERGMVLNWSGLPTTISLFVFCYCGHAIFPTLCTSMKDKSQFSKVLLICFALSTINYGSMAILGYLMFGENLRSQVTLNLPTGKMSSKLAIYTTLINPLTKYGIIITPIANAIEDTFSFHNSRPISITIRTALVISTVVVALTVPFFGYIMEFIGAFLSVTVSMLFPCVFYLKINKASRSFGLELIAIIAILALGSFVAVTGTYTSLRQIINRL* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12125591 12127646 + Vvi1g918 Vvi1g918 770118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g918 411 Pfam Transmembrane amino acid transporter protein 23 401 IPR013057 -
Vvi1g918 411 PANTHER OS05G0424000 PROTEIN-RELATED 20 409 - -
Vvi1g918 411 PANTHER OS06G0228500 PROTEIN 20 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g918 K15015 SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter) - vvi:100256814 773.467
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g918 Blo01g00429 . Bda01g02153 . . . . . Cmo04g01736 . . . . . . . Cpe01g01465 . . . . . . . . . . . . . . . . Cone6ag0582 . Lsi04g00425 Csa05g02453 Chy10g01003 Cme10g00414 . . . . . Bpe02g02340 Bma01g00101 . . . . Cma04g01658 . Car04g01698 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g1092 . 1 434 Amino Acid/Auxin Permease AAAP Family AT5G16740 62.0 1.2e-142 503.4
Vvi8g1162 ECH 53 424 Amino Acid/Auxin Permease AAAP Family AT2G41190 66.5 3.9e-140 495.4
Vvi14g966 . 2 340 Amino Acid/Auxin Permease AAAP Family AT3G30390 76.4 1.6e-148 523.1
Vvi18g604 . 1 394 Amino Acid/Auxin Permease AAAP Family AT3G30390 62.9 2.7e-140 495.7
Vvi13g124 . 12 439 Amino Acid/Auxin Permease AAAP Family AT3G30390 50.7 4.6e-116 415.2
Vvi14g1536 . 23 418 Amino Acid/Auxin Permease AAAP Family AT3G28960 62.5 2.5e-145 512.3
Vvi14g1531 . 33 429 Amino Acid/Auxin Permease AAAP Family AT3G28960 61.8 2.7e-144 508.8
Vvi14g1530 . 37 429 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.9 3.2e-137 485.3
Vvi6g861 . 19 418 Amino Acid/Auxin Permease AAAP Family AT3G28960 58.1 3.2e-137 485.3
Vvi1g918 . 9 412 Amino Acid/Auxin Permease AAAP Family AT3G28960 52.2 7.4e-118 421.0
Vvi14g1535 . 37 384 Amino Acid/Auxin Permease AAAP Family AT3G28960 51.1 2.3e-103 372.9
Vvi6g1090 . 18 239 Amino Acid/Auxin Permease AAAP Family AT3G28960 64.4 1.6e-83 307.0
Vvi14g966 . 2 338 Amino Acid/Auxin Permease AAAP Family AT5G38820 74.3 4.7e-145 511.5
Vvi18g604 . 1 394 Amino Acid/Auxin Permease AAAP Family AT5G38820 60.6 2.8e-137 485.7
Vvi9g658 . 1 374 Amino Acid/Auxin Permease AAAP Family AT1G80510 72.4 5.6e-152 534.6
Vvi13g543 ECH 52 566 Amino Acid/Auxin Permease AAAP Family AT5G02180 52.3 2.4e-135 479.6
Vvi13g543 ECH 55 567 Amino Acid/Auxin Permease AAAP Family AT3G09330 50.9 1.9e-126 449.9
Vvi13g543 ECH 55 566 Amino Acid/Auxin Permease AAAP Family AT3G09340 50.5 8.7e-127 451.1
Vvi13g543 ECH 1 500 Amino Acid/Auxin Permease AAAP Family AT2G39130 70.1 1.1e-190 663.3
Vvi14g1531 . 94 429 Amino Acid/Auxin Permease AAAP Family AT5G15240 59.2 1.3e-107 386.7
Vvi14g1536 . 83 418 Amino Acid/Auxin Permease AAAP Family AT5G15240 58.6 5.4e-106 381.3
Vvi14g1530 . 94 429 Amino Acid/Auxin Permease AAAP Family AT5G15240 57.7 9.0e-101 364.0
Vvi6g861 . 87 417 Amino Acid/Auxin Permease AAAP Family AT5G15240 57.1 1.5e-100 363.2
Vvi14g1535 . 64 384 Amino Acid/Auxin Permease AAAP Family AT5G15240 51.1 6.1e-81 298.1
Vvi6g1090 . 75 239 Amino Acid/Auxin Permease AAAP Family AT5G15240 58.4 1.8e-48 190.3
Vvi13g124 . 33 441 Amino Acid/Auxin Permease AAAP Family AT3G56200 64.8 7.2e-143 504.2
Vvi13g543 ECH 1 514 Amino Acid/Auxin Permease AAAP Family AT3G54830 64.8 1.6e-176 616.3
Vvi8g1162 ECH 54 425 Amino Acid/Auxin Permease AAAP Family AT3G54830 50.4 3.8e-101 365.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000580 6 2 3 3 5 2 3 2 2 5 2 2 3 4 3 3 2 4 3 2 3 4 5 3 4 3 6 3 5 7 104