Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g919 ATGGCAAGACCAGCTCCACCCGTAACTCCGATGTGTCCACCCAACTCCAATTCAAACACAACGCACCCACTCTCTCTACTACCCAAATGCACCTCTCTTAGAGAGCTCAAGCAACTCCAAGCCTTCGCCATCAAAACCCACCTCCACAGTGACCTCTCTGTCCTCACCAAGTTCATCAACTTCTGCAGCCTCAACCCTACGACTACCTCTATGCAACACGCCCACCACCTGTTTGATCAAATTCCCCAACCAGACATTGTCCTCTTTAACACCATGGCTCGCGGCTACGCCCGCACTGATACCCCTCTTCGAGCATTTACCCTTTTCACTCAAATTCTTTTTTCTGGCCTCTTCCCTGATGATTACACATTCCCGTCTCTTCTCAAGGCATGTGCCAGCTGCAAAGCCTTGGAAGAAGGCAGACAGTTGCACTGTCTTGCTATCAAACTTGGGCTAAGTGAAAATGTTTACGTGTGTCCTACGCTTATAAATATGTATACTGCGTGCAATGAGATGGATTGCGCTCGGAGGGTATTTGATAAGATATGGGAACCGTGTGTTGTTACTTACAATGCGATGATCACGGGTTATGCTCGGGGGAGTAGGCCTAATGAGGCCTTGTCATTGTTTCGAGAATTGCAAGCCAGAAATCTCAAGCCTACTGATGTTACTATGCTTAGTGTTCTTTCCTCTTGTGCTTTGTTAGGAGCTTTAGACTTGGGGAAGTGGATGCATGAGTATGTTAAGAAGAATGGGTTCAATCGATTTGTGAAGGTGGACACTGCACTAATAGACATGTATGCAAAATGTGGGAGTTTGGATGATGCGGTTTGTGTATTCGAGAATATGGCTGTAAGAGATACGCAGGCCTGGTCAGCAATGATTATGGCATATGCAATTCATGGGCATGGTCTTAAGGCAGTATCTCTGTTTAAAGAAATGAGAAAAGCTGGAACCGAACCTGATGAGATCACATTTTTGGGTCTTTTGTATGCCTGCAGCCATACTGGATTGGTAGAGGAGGGTTTTGAGTACTTCTATGGTATGAGGGACAAGTATGGGGTTATTCCTGGGATCAAGCATTACGGGTGTATGGTGGATTTGCTAGGTCGAGCTGGACGCTTGGAGGAGGCCTATGAGTTCATTGTGGGGTTGCCAATTAGGCCCACGCCCATACTCTGGCGAACCTTGTTATCTGCTTGTGGTAGTCATGGTAATGTAGAATTGGGGAAGCGGGTGATTGAGCAGATTTTTGAACTAGATGACTCTCATGGCGGGGATTACATAATCTTATCAAACTTGTGTGCCAGAGCTGGAAGATGGGAAGATGTGAATTATGTGAGGAAACTGATGAACGAAAGAGGGGTGGTAAAGATTCCGGGGTGTAGCTCAGTAGAGGTGAACAATGTAGTACATGAGTTCTTCTCTGGGGATGGGGTGCATTCTGTTTCTACGAAGTTACACCAGGCACTTGATGAATTGGTTAAGGAATTGAAGTTGGTTGGGTACGTCCCCAATACTTCTCTAGTCTTTCATGCAGACATGGAAGATGAAGAGAAGGAAGTAACTCTTAGATATCATAGTGAAAAGTTGGCCATTACTTTTGGGCTCCTAAACACTCCCCCAGGGACAACAATTCGTGTTGTGAAGAACCTTCGGGTCTGTGGGGATTGCCATTCTGCTGCTAAACTTATATCATTGATCTTTGATAGACAGATAATTCTCAGAGATGTCCAAAGATTCCATCATTTCAAAGATGGTAAGTGCTCTTGTGAAGATTATTGGTAG 1788 45.36 MARPAPPVTPMCPPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12128654 12130442 + Vvi1g919 Vvi1g919 770119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g919 595 Pfam PPR repeat family 287 333 IPR002885 -
Vvi1g919 595 Pfam PPR repeat family 84 132 IPR002885 -
Vvi1g919 595 Pfam PPR repeat family 185 232 IPR002885 -
Vvi1g919 595 Pfam E motif 404 466 IPR046848 -
Vvi1g919 595 Pfam DYW family of nucleic acid deaminases 502 595 IPR032867 GO:0008270
Vvi1g919 595 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g919 595 PANTHER BNAA02G26650D PROTEIN 15 581 - -
Vvi1g919 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Vvi1g919 595 Gene3D Tetratricopeptide repeat domain 102 259 IPR011990 GO:0005515
Vvi1g919 595 Gene3D Tetratricopeptide repeat domain 260 503 IPR011990 GO:0005515
Vvi1g919 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Vvi1g919 595 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Vvi1g919 595 TIGRFAM PPR: pentatricopeptide repeat domain 188 221 IPR002885 -
Vvi1g919 595 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 581 - -
Vvi1g919 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Vvi1g919 595 Pfam PPR repeat 362 381 IPR002885 -
Vvi1g919 595 Pfam PPR repeat 261 284 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g919 - - - vvi:100261911 1223.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g919 Vvi17g549 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g919 . . . . . . . . . Cmo18g01170 . Cma18g01149 . Car18g01058 . Cpe09g00181 . . . . . . . . Cla05g02440 . . . . . . . . . . . . Chy10g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187