Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g922 ATGAGGAGTCATGTGATTGTTTTTATGATTCTTTCTGTGACCGTCGAAATAAGGTCAAGTGTCCTGTCAACCTTCCTATATTCTAGGATACTCATCTCTTCACCATCATCCAGGATCTTTTGCGCAAAGAGAAAACGATTGGAATGCAGTGATAAACATGAACTTGTGTGCTCTAAGAAACGGGGGGCTCAGACAGCTTCTAGATCCTTCCACAACCTTCCAGTGTACGCCTCTCCCTATTCATCTCCTATATCTTCATCTCGATTCCCCCTTCCACGAACTTCATTCTTCTTCTCTCTAAAATCCCTTCCTTGTTTCTGTTTCTGTTTCTCTTTGGAGGAAATGGCTTCCGAATCTGAGGCTTCAGGGGCATCGTCTAGTGCATCTTTTCTTGAGAGGCTCATAAGTTCAAGGAACAGAGACCTCTCCATGTTCATACCCTTCATCTTGGGCTTCACTGACACAACCACAAGGCAAGAATCGGATGACCCAGATGATGAAACCACTGATACGCCAACCCCTCGCGACAGAATCATCCTCATCAACCCATTCACCCAAGGGATGATCGTGATTGAGGGCAATTCGAGCTTTGATTCTCTGCTGAGAGAGCTGGCCAGCAAGGGTGGACAGCCCCCGGCCACCAAGGCCTCGATTGAAGCCATGCCGTCGGTGGAGGTTGGAGGAGATGATGGGGAGTGTGTGATTTGTTTGGAAGAGTGGAAGGTGGGTTGTGTGGCCAAGGAGATGCCATGTAAGCATAAATTTCATGAGAATTGTATAGTGAAGTGGTTGGGGATTCATGGGTCTTGCCCTGTTTGCAGGCATAAGATGCCTGTTGATGAGGAGGATTTGGGGAAGAAGAGAGAGGGGAGTGTCATGTTTTTTTTCCCTCTCTTTCACCCCCTTTTTATTGAAGCAATAAATGGAAATATTTTCTCTTATTTTTTCTTCAATTTATTCTTCGAATTGCACAAAAGAGGAGAATACAATGGATGA 996 45.38 MRSHVIVFMILSVTVEIRSSVLSTFLYSRILISSPSSRIFCAKRKRLECSDKHELVCSKKRGAQTASRSFHNLPVYASPYSSPISSSRFPLPRTSFFFSLKSLPCFCFCFSLEEMASESEASGASSSASFLERLISSRNRDLSMFIPFILGFTDTTTRQESDDPDDETTDTPTPRDRIILINPFTQGMIVIEGNSSFDSLLRELASKGGQPPATKASIEAMPSVEVGGDDGECVICLEEWKVGCVAKEMPCKHKFHENCIVKWLGIHGSCPVCRHKMPVDEEDLGKKREGSVMFFFPLFHPLFIEAINGNIFSYFFFNLFFELHKRGEYNG* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12165161 12169309 + Vvi1g922 Vvi1g922 770122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g922 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 280 IPR013083 -
Vvi1g922 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 124 286 - -
Vvi1g922 331 PANTHER - 124 286 - -
Vvi1g922 331 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Vvi1g922 331 MobiDBLite consensus disorder prediction 156 175 - -
Vvi1g922 331 Pfam Ring finger domain 232 274 IPR001841 -
Vvi1g922 331 SUPERFAMILY RING/U-box 228 280 - -
Vvi1g922 331 SMART ring_2 233 273 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g922 - - vvi:100255065 339.347