Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g923 ATGAGCTTGGTTCTGTCAACTGATGCAAAGCCCAGGCTAAAATGGACTCCGGAACTTCATCATCGGTTTGTTGAAGCTGTGGCTCACCTTGGAGGGCCAGACAAGGCAACACCGAAGACTTTGATGAGGGTGATGGGAGTACCTGGACTGACTCTGTACCACTTGAAGAGTCATTTACAGAAATATAGGCTGGGGAAAAGTCAGCAGGCAGAAACCTTCAGTGACAACAATCAAGAAGATTACTGCGAGAATCAGAACAGAGAGATTCATTTTGATAGGGAAACCGGTGATGGAACTCAGAATCCGATTAATGAAAGCTTGCAGATAGCTCAGGCTCTACAAGTGCAATTGGAGGTGCAGAGGAAACTTCATGAACATATTGAGGTGCAGAGACATTTGCAGCTGCGTATTGAAGCCCAAGGAAAGTATTTACAGTCAGTATTAAAGAAAGCTCAAGAAACGCTTGCTGGCTATAATTCTTCTTCTGTAGGGGTGGAACTGGCAAAAGCTGAACTCACTCAGCTGGTCTCTATTTTTGACACTGGGTGCCCAAGTTCTTCATTCTCAGAATTAACAGAAACAGGAGGTTCTGGCTTAAAGGATAAAGAGAGGAAACCAATGAGGGGCACAGGATGTTCCCTGGAAAGCTCCTTAACATCCTCAGAGAGCTCTGGGAGAAAAGAAGAGAAGCAACCGAAGAATGAGAATGGGAACACCAATAAGTGTACTTCCATGGCTCCTACATTAATGGAGATCCATCCTGGAGATAGCCAAGCTTGGAAGAGTGGTTCGAGCAATCAAGCTAGTGGAAGAAAGAGAAACGGAAGCACCATTTCTGATGGAAATTGTGTGGAGCAGCCCTCTGCAATAGATTTGAACTGCAAGGAATAG 891 45.01 MSLVLSTDAKPRLKWTPELHHRFVEAVAHLGGPDKATPKTLMRVMGVPGLTLYHLKSHLQKYRLGKSQQAETFSDNNQEDYCENQNREIHFDRETGDGTQNPINESLQIAQALQVQLEVQRKLHEHIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYNSSSVGVELAKAELTQLVSIFDTGCPSSSFSELTETGGSGLKDKERKPMRGTGCSLESSLTSSESSGRKEEKQPKNENGNTNKCTSMAPTLMEIHPGDSQAWKSGSSNQASGRKRNGSTISDGNCVEQPSAIDLNCKE* 297
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 12171529 12173577 - Vvi1g923 Vvi1g923 770123
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g923 296 MobiDBLite consensus disorder prediction 185 296 - -
Vvi1g923 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 287 IPR044848 GO:0003700
Vvi1g923 296 Pfam Myb-like DNA-binding domain 12 63 IPR001005 -
Vvi1g923 296 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 10 65 IPR006447 GO:0003677
Vvi1g923 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 67 IPR017930 -
Vvi1g923 296 SUPERFAMILY Homeodomain-like 9 65 IPR009057 -
Vvi1g923 296 Pfam MYB-CC type transfactor, LHEQLE motif 107 154 IPR025756 -
Vvi1g923 296 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR23-LIKE ISOFORM X1 1 287 - -
Vvi1g923 296 Gene3D - 9 67 - -
Vvi1g923 296 MobiDBLite consensus disorder prediction 258 286 - -
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14551 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g923 - - vvi:100255052 570.466