Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g923 | ATGAGCTTGGTTCTGTCAACTGATGCAAAGCCCAGGCTAAAATGGACTCCGGAACTTCATCATCGGTTTGTTGAAGCTGTGGCTCACCTTGGAGGGCCAGACAAGGCAACACCGAAGACTTTGATGAGGGTGATGGGAGTACCTGGACTGACTCTGTACCACTTGAAGAGTCATTTACAGAAATATAGGCTGGGGAAAAGTCAGCAGGCAGAAACCTTCAGTGACAACAATCAAGAAGATTACTGCGAGAATCAGAACAGAGAGATTCATTTTGATAGGGAAACCGGTGATGGAACTCAGAATCCGATTAATGAAAGCTTGCAGATAGCTCAGGCTCTACAAGTGCAATTGGAGGTGCAGAGGAAACTTCATGAACATATTGAGGTGCAGAGACATTTGCAGCTGCGTATTGAAGCCCAAGGAAAGTATTTACAGTCAGTATTAAAGAAAGCTCAAGAAACGCTTGCTGGCTATAATTCTTCTTCTGTAGGGGTGGAACTGGCAAAAGCTGAACTCACTCAGCTGGTCTCTATTTTTGACACTGGGTGCCCAAGTTCTTCATTCTCAGAATTAACAGAAACAGGAGGTTCTGGCTTAAAGGATAAAGAGAGGAAACCAATGAGGGGCACAGGATGTTCCCTGGAAAGCTCCTTAACATCCTCAGAGAGCTCTGGGAGAAAAGAAGAGAAGCAACCGAAGAATGAGAATGGGAACACCAATAAGTGTACTTCCATGGCTCCTACATTAATGGAGATCCATCCTGGAGATAGCCAAGCTTGGAAGAGTGGTTCGAGCAATCAAGCTAGTGGAAGAAAGAGAAACGGAAGCACCATTTCTGATGGAAATTGTGTGGAGCAGCCCTCTGCAATAGATTTGAACTGCAAGGAATAG | 891 | 45.01 | MSLVLSTDAKPRLKWTPELHHRFVEAVAHLGGPDKATPKTLMRVMGVPGLTLYHLKSHLQKYRLGKSQQAETFSDNNQEDYCENQNREIHFDRETGDGTQNPINESLQIAQALQVQLEVQRKLHEHIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYNSSSVGVELAKAELTQLVSIFDTGCPSSSFSELTETGGSGLKDKERKPMRGTGCSLESSLTSSESSGRKEEKQPKNENGNTNKCTSMAPTLMEIHPGDSQAWKSGSSNQASGRKRNGSTISDGNCVEQPSAIDLNCKE* | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12171529 | 12173577 | - | Vvi1g923 | Vvi1g923 | 770123 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g923 | 296 | MobiDBLite | consensus disorder prediction | 185 | 296 | - | - | |
Vvi1g923 | 296 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 287 | IPR044848 | GO:0003700 | |
Vvi1g923 | 296 | Pfam | Myb-like DNA-binding domain | 12 | 63 | IPR001005 | - | |
Vvi1g923 | 296 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 10 | 65 | IPR006447 | GO:0003677 | |
Vvi1g923 | 296 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 7 | 67 | IPR017930 | - | |
Vvi1g923 | 296 | SUPERFAMILY | Homeodomain-like | 9 | 65 | IPR009057 | - | |
Vvi1g923 | 296 | Pfam | MYB-CC type transfactor, LHEQLE motif | 107 | 154 | IPR025756 | - | |
Vvi1g923 | 296 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ORR23-LIKE ISOFORM X1 | 1 | 287 | - | - | |
Vvi1g923 | 296 | Gene3D | - | 9 | 67 | - | - | |
Vvi1g923 | 296 | MobiDBLite | consensus disorder prediction | 258 | 286 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14551 | PF00249 | Myb_DNA-binding | 1.20E-07 | CL0123 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g923 | - | - | vvi:100255052 | 570.466 |