Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g924 ATGTTGGATTTCAAGGACCCGGCGATTAAGCTCTTTGGCAAGACCATCTCATTGCCTCTCAACCCCCACCTTTCTCCTACTTCCCCACCTCCCCCTCCTCTTTCTTCCACCACTTCCTTCCCGGACGACACTTCTCAGGGACTTCAACCCCCCTCACAGGACCAGAAACCTTTGGAAGGACAGGAATTTGAGGGTAAAGAGGAAGATGGCACCTCACGTCAGACATCAGAGGAGTTAAAAGATCCTACAGCATCGCCGGGGGTAAGTGAGAACCCTGAAACACCCTCTGCTGACAAAGAGACTTCCAAGGATGGAGAACAGAGTGAGATAAGTGGCTCACAAGAAAAAACTTTGAAGAAGCCTGACAAAATACTACCATGTCCGCGTTGTAATAGCATGGACACCAAGTTCTGCTACTACAACAACTACAATGTCAACCAGCCCCGCCACTTCTGCAAGAACTGTCAGAGATATTGGACTGCTGGAGGAACCATGAGAAATGTGCCAGTGGGTGCCGGTCGTCGCAAGAACAAGAACTCCTCTGCTTCACAGTATCGTCACATTATGGTGTCTGAAGCTCTTCAGACTGCTCGAGCAAGCGCTGCAAATGGAATCCACCATCCCGCTTTGGGGAACAATGGCACTGTCCTTAATTTTGGCTCAGATGAGCCCGTGGTAAAGAATTTTCAAGCCTTTTCTCCTCATGTGCCATGCTTCCCAGGGGCTTCTTGGTCCTATCCATGGAATCCTGCTCAGTGGAGCTCTAAAATCCCCCCTCCCGCCTTTTGCCCTCCGGGATTTCCTATATCATTCTACCCTGCACCAGCTTACTGGGGTTCCAACCCAGGGAAAGAAGATCACCAGAAAGAGAACAATCCAGAAAGAGGTGTTTGGATTCCAAAGACACTGAGGATTGACGATCCCAATGAAGCTGCTAAGAGCTCTATATGGACAACACTTGGGATTAAGAATGATGGGAGTAATGGGGGAAGTCTCTTGAAGGCCTTTCAATCAAAGGGTGACGAGAAAAAGCGCATAGCTGAAATGTCTCCGGTGTTGCAAGCCAACCCTGCAGCCTTGTCCAGATCACTCAACTTCCATGAGAGAGCCTAA 1113 49.33 MLDFKDPAIKLFGKTISLPLNPHLSPTSPPPPPLSSTTSFPDDTSQGLQPPSQDQKPLEGQEFEGKEEDGTSRQTSEELKDPTASPGVSENPETPSADKETSKDGEQSEISGSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSASQYRHIMVSEALQTARASAANGIHHPALGNNGTVLNFGSDEPVVKNFQAFSPHVPCFPGASWSYPWNPAQWSSKIPPPAFCPPGFPISFYPAPAYWGSNPGKEDHQKENNPERGVWIPKTLRIDDPNEAAKSSIWTTLGIKNDGSNGGSLLKAFQSKGDEKKRIAEMSPVLQANPAALSRSLNFHERA* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12212092 12215480 + Vvi1g924 Vvi1g924 770124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g924 370 MobiDBLite consensus disorder prediction 96 123 - -
Vvi1g924 370 MobiDBLite consensus disorder prediction 77 95 - -
Vvi1g924 370 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Vvi1g924 370 MobiDBLite consensus disorder prediction 23 37 - -
Vvi1g924 370 MobiDBLite consensus disorder prediction 38 56 - -
Vvi1g924 370 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
Vvi1g924 370 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Vvi1g924 370 MobiDBLite consensus disorder prediction 59 76 - -
Vvi1g924 370 MobiDBLite consensus disorder prediction 16 126 - -
Vvi1g924 370 PANTHER CYCLIC DOF FACTOR 2 225 281 IPR045174 GO:0003700|GO:0006355
Vvi1g924 370 PANTHER CYCLIC DOF FACTOR 2 285 369 IPR045174 GO:0003700|GO:0006355
Vvi1g924 370 PANTHER CYCLIC DOF FACTOR 2 1 225 IPR045174 GO:0003700|GO:0006355
Vvi1g924 370 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 225 - -
Vvi1g924 370 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 225 281 - -
Vvi1g924 370 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 285 369 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g924 Vvi17g562 ECH
Vvi1g924 Vvi17g423 ECH
Vvi1g924 Vvi14g1560 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14552 PF02701 zf-Dof 2.00E-32 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g924 - - vvi:100265355 608.216