Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g926 ATGGTGTCAAGTGTTCATGGTCAAGGATGGATCAATGCTCATGCCACCTTCTATGGTGGGGGTGATGCTTCTGGGACAATGGGTGGTGCTTGTGGGTATGGAAACTTGTACAGCCAGGGGTATGGAACAAACACAGCAGCTTTGAGCACAGCTCTGTTCAACAGTGGATTGAGCTGTGGATCTTGCTATGAGATTAGGTGCGTGAATGACCCAAAATGGTGCCTGCCTGGCTCCATTGTGGTCACAGCCACCAATTTCTGTCCACCAAACAATGCCCTCTCAAACAATGCAGGAGGGTGGTGTAACCCTCCTCTGCAACACTTTGATCTCTCTGAGCCTGTCTTCCAACACATTGCCCAATTCAGAGCTGGGATTGTCCCCGTCTCCTACAGAAGGGTACCCTGCAGCAGGAGGGGAGGCATAAGGTTTACCATCAATGGCCACTCTTACTTCAACCTAGTCCTCATCACAAACGTTGGTGGAGCTGGTGATGTCCATGCTGTGGCAATCAAAGGGTCAAGGACTGGTTGGCAGTCATTGTCCAGGAACTGGGGCCAAAACTGGCAGAGCAACACCTATCTTAATGGACAGAGCCTCTCGTTCAAGGTCACCACCAGTGATGGCCACACCGTTGTCTCCTACAATTGTGTCCCTGCTGGCTGGTCCTTTGGCCAGACCTTCAGTGGAGCACAGTTCCGCTAA 702 51.57 MVSSVHGQGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEIRCVNDPKWCLPGSIVVTATNFCPPNNALSNNAGGWCNPPLQHFDLSEPVFQHIAQFRAGIVPVSYRRVPCSRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSRTGWQSLSRNWGQNWQSNTYLNGQSLSFKVTTSDGHTVVSYNCVPAGWSFGQTFSGAQFR* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12260036 12261821 - Vvi1g926 Vvi1g926 770126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g926 233 PANTHER EXPANSIN-A15 3 233 IPR002963 GO:0009664
Vvi1g926 233 SUPERFAMILY PHL pollen allergen 137 228 IPR036749 -
Vvi1g926 233 Gene3D - 140 232 IPR036749 -
Vvi1g926 233 Pfam Expansin C-terminal domain 141 218 IPR007117 -
Vvi1g926 233 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 140 IPR007112 -
Vvi1g926 233 Pfam Lytic transglycolase 45 130 IPR009009 -
Vvi1g926 233 SMART dpbb_1 45 130 IPR007112 -
Vvi1g926 233 SUPERFAMILY Barwin-like endoglucanases 8 158 IPR036908 -
Vvi1g926 233 PRINTS Expansin signature 40 54 IPR002963 GO:0009664
Vvi1g926 233 PRINTS Expansin signature 67 78 IPR002963 GO:0009664
Vvi1g926 233 PRINTS Expansin signature 79 89 IPR002963 GO:0009664
Vvi1g926 233 PRINTS Expansin signature 98 115 IPR002963 GO:0009664
Vvi1g926 233 PRINTS Expansin signature 115 128 IPR002963 GO:0009664
Vvi1g926 233 PRINTS Expansin signature 139 151 IPR002963 GO:0009664
Vvi1g926 233 PRINTS Expansin signature 151 172 IPR002963 GO:0009664
Vvi1g926 233 PRINTS Expansin signature 186 207 IPR002963 GO:0009664
Vvi1g926 233 PRINTS Expansin signature 215 231 IPR002963 GO:0009664
Vvi1g926 233 PRINTS Expansin/Lol pI family signature 9 24 IPR007118 GO:0005576
Vvi1g926 233 PRINTS Expansin/Lol pI family signature 27 45 IPR007118 GO:0005576
Vvi1g926 233 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Vvi1g926 233 PRINTS Expansin/Lol pI family signature 123 139 IPR007118 GO:0005576
Vvi1g926 233 PRINTS Expansin/Lol pI family signature 177 191 IPR007118 GO:0005576
Vvi1g926 233 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Vvi1g926 233 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 150 229 IPR007117 -
Vvi1g926 233 Gene3D - 2 136 IPR036908 -
Vvi1g926 233 PANTHER EXPANSIN-A10 3 233 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g926 Vvi17g567 ECH
Vvi1g926 Vvi14g1564 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g926 - - vvi:100260158 493.426