Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g927 ATGGGCGTCTTGGACGAGGGGCACGTGGAGGTGGGATTTGAGCAAGAGACTCTAACCATTGAGGAGGCTGTTAAAGTGCTTTTGCAGGGTTTGGGTGAGGATATCAATAGGGAAGGCCTGAGCAAGACTCCTGCCCGTGTTGCCAAGGCCCTTCGTGAAGGAACTAGAGGTTACAGACAAAAGGCAAAGGACATTGTTCAAGGTGCCTTATTCCCTGAAGCTGGTTTGAATAATGGAATTGGTCATGCAGGAGGAGTGGGTGGGCTTGTTAAGTGTCATGTGGGTTATGTCCCATCAGGGCAATGCGTTGTGGGCTTAAGCAAGCTTTCTCGGTCAATAGTACATTTCTATGGCTTCAAGCTTCAGGTACAGGAAAGAATTACCAGGCAAGTTGCTGAGACTGTTTCATCTCTGTTAGGTGGGGATGTGATAGTGGTGGTGGAAGCTAGTCACTCTTGTATGGTATCCAGAGGAATTGAGAAGTTAGGAAGTAATACTGCTACAATGGCTCTGCTTGGCCGATTTTCAACTGACGATACTGCAAAGACCATGTTTTTGCAGAGAATTCAAAACACTCCAACTTCTTGA 588 46.94 MGVLDEGHVEVGFEQETLTIEEAVKVLLQGLGEDINREGLSKTPARVAKALREGTRGYRQKAKDIVQGALFPEAGLNNGIGHAGGVGGLVKCHVGYVPSGQCVVGLSKLSRSIVHFYGFKLQVQERITRQVAETVSSLLGGDVIVVVEASHSCMVSRGIEKLGSNTATMALLGRFSTDDTAKTMFLQRIQNTPTS* 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12284701 12288781 - Vvi1g927 Vvi1g927 770127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g927 195 Pfam GTP cyclohydrolase I 91 189 IPR020602 -
Vvi1g927 195 Pfam GTP cyclohydrolase I 20 71 IPR020602 -
Vvi1g927 195 PANTHER GTP CYCLOHYDROLASE I 1 90 111 - -
Vvi1g927 195 PANTHER GTP CYCLOHYDROLASE I 1 9 90 - -
Vvi1g927 195 PANTHER GTP CYCLOHYDROLASE I 1 112 192 - -
Vvi1g927 195 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 14 190 - -
Vvi1g927 195 Gene3D - 17 66 IPR043134 -
Vvi1g927 195 Gene3D - 86 192 IPR043133 -
Vvi1g927 195 PANTHER GTP CYCLOHYDROLASE I 90 111 IPR001474 GO:0003934|GO:0046654
Vvi1g927 195 PANTHER GTP CYCLOHYDROLASE I 9 90 IPR001474 GO:0003934|GO:0046654
Vvi1g927 195 PANTHER GTP CYCLOHYDROLASE I 112 192 IPR001474 GO:0003934|GO:0046654
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g927 K01495 GCH1, folE; GTP cyclohydrolase IA [EC:3.5.4.16] - vvi:100263593 199.519
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g927 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .