Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g929 ATGAATAATAATAATTACATAACTTCTACCTATCTATCATTTAAGTTTATAATAAAATATTTTTTGTATACAAAGATATATAGGGCCGCACCCCAAACTCAATTTTTGCTGAAGAGGCTTCCCACTACTCAACTCAACAATACAAGAGCTCCTAATAATCATCCCAGATACTCAACAAGGGAAAAGATATCCTTACTAATGGCGGGCCAGAGAAATGACTATGGCAAGAGATCCCATTCTCAGTCTGACTATGGTGGTAATGGCGGAAGTAAGAGAAGAAACCCTGGAGATGACAAGGAGCAGCATGGTATTGGGGTAGAAGATACTGTATACCGTTACCTGTGCCCTGTGAGAAAGATTGGAAGCATCATTGGTAGGGGTGGAGACATTGCAAAACAACTAAGATCTGAAACTAAATCAAACATTAGGATTGGGGAAACTATGCCAGGCTGTGAGGAACGTGTTGTCACCATCTATAGTTCAAGTGAGGAAACTAATCCATTTGGTGATACCGGTGAGCTTGTTTCACCTGCACAAGATGCTCTCTTCAGGGTGCATGATAGGATTGTTGCTGGTGAGCTGCCTGCTGATGAGGAACCTGAAGAGGCACAGCAAGTTACTGTTCGGATGCTTGTGCCTTCTGATCAGATTGGTTGTGTTATTGGGAAAGGTGGGCAAGTGATTCAGAATATACGCAGTGAAACTCGTGCTCAGATTCGCATTCTAAAAGATGAACATCTGCCACCTTGTGCCCTTAGTTCTGATGAGCTTCTGCAGATAATTGGGGACGCATCAGTTGTGAGAAAGGCTCTTCATCAACTAGCATCTCGCCTTCATGAGAATCCATCACGATCCCAGCACCTGCTGTTGTCTTCTTCCCCCAACATGTATCAATCTGGTGGAGATTGGTCGCACTCTTATTACTCTGCTCGGAGGGATGAATCTTCTGCAAAGGAATTCTCTCTTCGTTTGGTTTGTCCAACTGGAAATATTGGAGGTGTGATTGGCAAAGGTGGCGGTATTATCAAACAAATCAGACAGGAATCTGGGGCTTCCATTAAAGTTGATAGTTCAAGTGCTGAAGGAGATGATTGTATTATTTTTATATCAGCAAAGGAGTTCTTCGAAGATCCATCTCCAACCATTGATGCAGCACTGCGGTTGCAACCACGATGCAGTGAGAAAGCTGAAAGGGAATCTAGTGATTCTGTGGTCACTACCCGTCTACTCGTTCCAAGCTCACGGATTGGATGCCTTATTGGTAAAGGTGGGGCCATCATTTCTGAGATGAGGAGTGTTACAAGAGCAAACATCCGCATTCTATCAAAGGAAAATCTTCCCAAGGTTGCATCTGAAGATGATGAGATGGTGCAGATCACTGGAGAGCTAAATGTTGCTAGCAATGCCCTTTTACAAGTGACATTGCGGTTAAAAGCTAATTTATTTGAAAGGGAGGGTGCAATAGCTGCAATTCCACCAACCCTTCCCTACCTTCCCATGTCAGACATGTCAGATGGTTCAAAATATGGAAGCCGTGATAGTCAACCGCGTGAACGTGGGTTTTCTTCTTATTCAGGTGGATATGGTTCTAGTGATTTGGCCCCAAGTGACAGATATGGGAGCTATGGTGGTTCACAGAGTGGTGGTGGGAATGGTTATGGAGCATATAGTGGCTATTCTTCCAGTCGATCGGGTAGCACTGGGTTATCTAGTCAGGGCCGTGTTTCCCATGGGAAACATCATGGTTATTAG 1752 43.89 MNNNNYITSTYLSFKFIIKYFLYTKIYRAAPQTQFLLKRLPTTQLNNTRAPNNHPRYSTREKISLLMAGQRNDYGKRSHSQSDYGGNGGSKRRNPGDDKEQHGIGVEDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETNPFGDTGELVSPAQDALFRVHDRIVAGELPADEEPEEAQQVTVRMLVPSDQIGCVIGKGGQVIQNIRSETRAQIRILKDEHLPPCALSSDELLQIIGDASVVRKALHQLASRLHENPSRSQHLLLSSSPNMYQSGGDWSHSYYSARRDESSAKEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAKEFFEDPSPTIDAALRLQPRCSEKAERESSDSVVTTRLLVPSSRIGCLIGKGGAIISEMRSVTRANIRILSKENLPKVASEDDEMVQITGELNVASNALLQVTLRLKANLFEREGAIAAIPPTLPYLPMSDMSDGSKYGSRDSQPRERGFSSYSGGYGSSDLAPSDRYGSYGGSQSGGGNGYGAYSGYSSSRSGSTGLSSQGRVSHGKHHGY* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12386852 12392723 + Vvi1g929 Vvi1g929 770129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g929 583 ProSiteProfiles Type-1 KH domain profile. 404 473 - -
Vvi1g929 583 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 199 282 IPR036612 GO:0003723
Vvi1g929 583 ProSiteProfiles Type-1 KH domain profile. 205 274 - -
Vvi1g929 583 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 69 529 - -
Vvi1g929 583 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 108 163 IPR036612 GO:0003723
Vvi1g929 583 CDD PCBP_like_KH 110 186 - -
Vvi1g929 583 Pfam KH domain 207 274 IPR004088 GO:0003723
Vvi1g929 583 Pfam KH domain 111 163 IPR004088 GO:0003723
Vvi1g929 583 Pfam KH domain 406 466 IPR004088 GO:0003723
Vvi1g929 583 Pfam KH domain 322 371 IPR004088 GO:0003723
Vvi1g929 583 Gene3D - 319 480 - -
Vvi1g929 583 Gene3D - 107 286 - -
Vvi1g929 583 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 399 477 IPR036612 GO:0003723
Vvi1g929 583 PANTHER F7A19.25 PROTEIN 69 529 - -
Vvi1g929 583 SMART kh_6 318 390 IPR004087 GO:0003676
Vvi1g929 583 SMART kh_6 403 478 IPR004087 GO:0003676
Vvi1g929 583 SMART kh_6 204 279 IPR004087 GO:0003676
Vvi1g929 583 SMART kh_6 107 190 IPR004087 GO:0003676
Vvi1g929 583 ProSiteProfiles Type-1 KH domain profile. 319 389 - -
Vvi1g929 583 ProSiteProfiles Type-1 KH domain profile. 108 182 - -
Vvi1g929 583 MobiDBLite consensus disorder prediction 71 103 - -
Vvi1g929 583 CDD PCBP_like_KH 406 474 - -
Vvi1g929 583 MobiDBLite consensus disorder prediction 500 583 - -
Vvi1g929 583 CDD PCBP_like_KH 207 275 - -
Vvi1g929 583 MobiDBLite consensus disorder prediction 516 530 - -
Vvi1g929 583 MobiDBLite consensus disorder prediction 540 574 - -
Vvi1g929 583 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 311 371 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g929 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - vvi:100265365 946.806
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g929 Vvi14g1566 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g929 . . . . . . . Bma15g00293 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0574 Cone9ag0580 . . . . . . . . . . . . . Cmo04g02901 . . . . Car15g00261 Cpe13g00957 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3