Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g93 | ATGTCCTCCTGTAACTGTCACCAGCTCCTCTCTCCTCTACCTTTGGCTCTTCCTTCTTCACACTCTCCTCCTTCCCTCCAAACTCAACCGCCACCTTCAATTCAGAAACCCACCGCTTCTCCACTCACCTCCAAAACCCCTCCAAAACCCACATCCCCATCGCGCTCCACCGCCTCATGGGTCGACGCCCTTCGCTCCAGAACGCGATCAAATGATTTCCGTGAAGCCATTTCCACTTACATCGAAATGACGGTGTCGGGTGCTCGACCCGACAACTTCGCTTTCCCGGCAGTTTTGAAGGCGGTGTCGGGCCTCCAGGACTTGAAAACCGGGGAACAGATTCATGCGGCTGCTGTGAAATTTGGGTATGGATCGTCTTCGGTGACTGTGGCGAATACACTTGTTAATATGTATGGGAAGTGCGGTGGGATTGGGGATAAAACGTTTACGAATAATGCATTGATGGCAATGTATGCGAAATTGGGAAGAGTTGATGACTCAAAAGCTTTGTTTGAATCATTCGTGGACCGTGATATGGTCTCGTGGAACACCATGATAAGCTCATTCTCGCAAAGTGATCGATTTTCTGAGGCGTTGGCCTTCTTCCGCCTCATGGTTCTTGAAGGGGTTGAGCTTGATGGGGTTACAATTGCGAGTGTTCTTCCTGCCTGTTCCCATTTGGAGAGGTTGGATGTTGGAAAGGAAATTCATGCGTATGTCTTGAGAAACAATGATCTGATTGAAAATTCTTTCGTGGGTAGCGCACTAGTCGACATGTACTGCAATTGCCGTCAGGTTGAGAGTGGCCGGAGGGTTTTTGACCATATCTTAGGACGGCGAATTGAGCTTTGGAATGCCATGATTTCAGGTTATGCTCGAAATGGGCTTGATGAGAAGGCCTTGATTCTCTTCATTGAGATGATAAAGGTAGCTGGGCTTCTCCCGAACACCACCACAATGGCAAGTGTTATGCCAGCTTGTGTACACTCCCTGGCAGCAATAGCAAAGGGGAAAGAAATTCATGCCTATGCCATTAGAAACATGCTGGCATCAGACATCACTGTGGGAAGCGCATTAGTTGATATGTATGCAAAATGCGGCTGCTTGAACCTATCTAGAAGGGTGTTCAATGAAATGCCCAACAAAAATGTCATCACATGGAATGTCCTCATCATGGCTTGTGGAATGCATGGAAAAGGGGAGGAAGCTTTGGAACTATTCAAAAACATGGTGGCAGAAGCAGGCAGGGGTGGGGAAGCAAAACCTAATGAAGTAACATTTATTACGGTCTTCGCAGCATGTAGTCACTCTGGGCTGATAAGTGAAGGCCTAAACTTGTTCTATAGAATGAAACATGATCATGGAGTAGAACCCACATCAGATCACTACGCTTGTGTTGTAGACTTGCTTGGTCGAGCAGGTCAACTGGAGGAAGCTTATGAACTTGTTAATACCATGCCTGCTGAGTTTGACAAAGTTGGTGCTTGGAGTAGCTTGCTTGGTGCCTGTCGAATTCACCAGAATGTGGAACTAGGGGAAGTTGCAGCCAAAAATCTGCTTCATCTAGAACCCAATGTGGCTAGCCATTATGTTCTACTCTCTAATATCTACTCATCTGCTGGGCTCTGGAACAAGGCCATGGAAGTTCGGAAGAACATGAGGCAAATGGGAGTGAAAAAAGAACCTGGGTGCAGTTGGATTGAGTTTAGAGATGAAGTACATAAGTTCATGGCCGGGGATGTATCTCATCCACAAAGTGAGCAACTCCATGGGTTCCTGGAGACATTGTCAGAGAAGATGAGAAAGGAGGGGTACGTGCCTGACACTTCTTGTGTTCTTCACAATGTTGATGAAGATGAGAAGGAAAATCTACTATGTGGGCATAGTGAGAAACTGGCAATAGCATTTGGTATCCTGAACACCCCTCCCGGCACTACCATTCGAGTAGCTAAGAACCTTAGAGTTTGTAATGACTGCCATGCTGCTACAAAGTTTATCTCAAAAATCATGGAGAGGGAGATCATTGTAAGGGATGTTAGGAGGTTCCATCATTTCAAGGAGGGAACTTGTTCCTGTGGGGATTATTGGTGA | 2091 | 46.63 | MSSCNCHQLLSPLPLALPSSHSPPSLQTQPPPSIQKPTASPLTSKTPPKPTSPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW* | 697 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 961114 | 963805 | - | Vvi1g93 | Vvi1g93 | 769293 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g93 | 696 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 383 | 413 | IPR002885 | - | |
| Vvi1g93 | 696 | TIGRFAM | PPR: pentatricopeptide repeat domain | 385 | 412 | IPR002885 | - | |
| Vvi1g93 | 696 | TIGRFAM | PPR: pentatricopeptide repeat domain | 283 | 317 | IPR002885 | - | |
| Vvi1g93 | 696 | TIGRFAM | PPR: pentatricopeptide repeat domain | 180 | 213 | IPR002885 | - | |
| Vvi1g93 | 696 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 178 | 212 | IPR002885 | - | |
| Vvi1g93 | 696 | Pfam | PPR repeat | 152 | 177 | IPR002885 | - | |
| Vvi1g93 | 696 | Pfam | PPR repeat | 284 | 309 | IPR002885 | - | |
| Vvi1g93 | 696 | Pfam | PPR repeat | 463 | 486 | IPR002885 | - | |
| Vvi1g93 | 696 | Gene3D | Tetratricopeptide repeat domain | 414 | 612 | IPR011990 | GO:0005515 | |
| Vvi1g93 | 696 | Gene3D | Tetratricopeptide repeat domain | 60 | 144 | IPR011990 | GO:0005515 | |
| Vvi1g93 | 696 | Gene3D | Tetratricopeptide repeat domain | 145 | 244 | IPR011990 | GO:0005515 | |
| Vvi1g93 | 696 | MobiDBLite | consensus disorder prediction | 13 | 60 | - | - | |
| Vvi1g93 | 696 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 280 | 315 | IPR002885 | - | |
| Vvi1g93 | 696 | MobiDBLite | consensus disorder prediction | 24 | 48 | - | - | |
| Vvi1g93 | 696 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC | 41 | 123 | - | - | |
| Vvi1g93 | 696 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC | 176 | 311 | - | - | |
| Vvi1g93 | 696 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC | 312 | 682 | - | - | |
| Vvi1g93 | 696 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 41 | 123 | - | - | |
| Vvi1g93 | 696 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 176 | 311 | - | - | |
| Vvi1g93 | 696 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 312 | 682 | - | - | |
| Vvi1g93 | 696 | Gene3D | Tetratricopeptide repeat domain | 332 | 413 | IPR011990 | GO:0005515 | |
| Vvi1g93 | 696 | Pfam | PPR repeat family | 382 | 434 | IPR002885 | - | |
| Vvi1g93 | 696 | Pfam | PPR repeat family | 178 | 224 | IPR002885 | - | |
| Vvi1g93 | 696 | Pfam | E motif | 506 | 568 | IPR046848 | - | |
| Vvi1g93 | 696 | Pfam | DYW family of nucleic acid deaminases | 604 | 696 | IPR032867 | GO:0008270 | |
| Vvi1g93 | 696 | Gene3D | Tetratricopeptide repeat domain | 245 | 331 | IPR011990 | GO:0005515 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g93 | - | - | vvi:100259539 | 863.988 |