Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g936 ATGTTTCCCTCTCGGGGAAGCAATACATATGGACAGCAACCATATGCTGCACAATCTGGATATGGACAAAATCTGGGATCTGCTTATTCTGGAAGTTCCATTGGAGGACCTGATGGGGGTACTCAACTTTCCGTGGCTTCTCGGCATTCGTCAATGTTAGGTGGTTCTCAAGAAGCCGAAATTGGTGGATATAGAGCTCATCCCTCAGCTGCTGGTCATTATGGGGGACAATATAGTTCTTTGTATAGCTCTGCTTTGAGCAGTTCTCAACAGGTTCCAGCAAGTGCCAAAGGAGTGGGACCATCAACTTTGGAATCTCGCAGTGGCTATGCATCAGCTATGCCTGAGTCACCTAAGTTTACTTCAAGTGACTTTGTCTCATCATCAACACATGGATATGGTCAAAAAGGTGATCAGTTTTTTTCAGAGAAGCTTTCTGATTATCCATCTATGGAGAGGCGGCAATATGGTGAGCGACAGAGTGCCTATGTAGGAGGGAGGGAATTGCAGAGTGAATCAAGTGGACGCTATGCTGATCCTGTTGGGTTTAGTCATCAACATCAGCCTGAGATTTATGATCGTGTTGATCAGGCATCACTTCTTCGACAAGAACAAATGCTTAAAGCTCAATCACTGCAATCTACTTCTCTTGATGGGGGTGCCAGACAAACTGATTATCTTGCAGCAAGGAGTGCAACTATTCGTCATTCAACCCAAGATCTTATGCCATATAGTGGAAGATTGGATGGTGATCCTCGCAATCTATCGATGCTTAGTGGTTCTTCATATGGTGCACAACATGCACCCTCTATTTTGGGGGCTGCTCCACGAAGAAATGTGGACGATCTCATGTATGCTCAAAGTTCTTCAAATCCAGGTTATGGAGTGAGCCTTCCTCCAGGTAGGGACTATGCCACAGGAAAGGGACTTCATGGCACATCTCTTGAGCCTGATTTTCTATCACGTGGTGGTCATACAAGGATCAATGAGCGTAAAGATGACAGGGAACGTGAACGAGAAAGGGAAAGAGAAAGAGAAAGGGAAAGGGAAAAGGAAAGGGAAAGAGAACGTGAAAGGAAACGCATTTTCGAACGGCGGGAAAAGGAGAGAGAACGAGAGCGCAAACGTGCAGCTGAAGTTAAGCGTGAACGAACTCCACTAAGGATCTCTAAGGACCGCCGTGGATCCTCTTTGGTGAAGGATGAAAGATCAATACGACGAGAATCTCCACGTCATGAAGCATTGCATAGGCGTCATACACCTGTTAAAGAAAAACGGAGAGAATATGCCTGCAAGGTTTACTCATCCAGTTTGGTAGATATTGAGAGGGACTATTTGTCCATGGATAAGCGTTATCCCAAACTTTTCATATCTCCAGAGTTCTCTAAGGTTGTTGTGAACTGGCCCAAGGGAAACCTTCAACTTTCTTTCAATACTCCTGTCAGTTTTGAGCATGATTTTGTTGAAGAAGAGAGTTCCCCTGAACAGAAAGAGGTATCTACCAAGCAGTTGGCTGAAGAACCTGTAGAATCAAAACAAGGAAGTACAGTGTGGAATGCAAAGATGATCTTGATGAGTGGACTCAGCAGGAATGCTCTGGAGGATCTGTCATCTGAAAAAAGCCATGATGACCGCATACCTCATATTTGCAATATCCTTAGGTTTGCTGTTCTTAAAAAGGACCGTTCATTTATGGCAATTGGAGGCCCATGGGATGTTGCTGATGGAGGAGATCCTTCAGTTGATGATGACTCATTGGTTCAAACAATTCTTAGATATGCAAAGGATGTGACTCAACTTGATTTGGAGAACTGCCAGAATTGGAACCGTTTCCTTGAGATACACTATGATAGAATTGGCGAGGATGGATTCTTTAGCCATAAAGAGGTCACTGTACTGTTTGTTCCTGATTTATCAGGGTGTCTCCCTTCATTAGATACATGGCGAGACCAATGGCTTGCACACAAGAAGGCTGTTGCTGAGAGAACGTGCCAACTTTCTTTGAAAAGAGAGAAATCTAAAGAGAAGAAGGAAGGGCTGAAAGATAAGGAAATTGATTCTACAAAAGCAGTTAAACAAGTAGACAAATCAGCAAAAACAAAAGATTCTGCATCCTCTGGACAGGCAGATGTTAACAAAAAAGAGAAAAATGGGAGTCAACCAAAAGGTGATGAAGCTGATAAAGAAGGCAATGGAAATAGTGATAAAAATGTTGTGAAAAAAGATGTGGTTGAAATGAGTCAGGATGGCAAAACTATAGAGAAAAAGGAATCAGGAGGAACTGCTGGTTCTCAGACATCAGGCAATGCAAAATCTGGGAAGAAGAAACTTGTAAAAAAGGTTGTAAAACAGAAGGTTGCTGATAAGAAAGCTGGTACAGAGAACACAGAAAATGAAGAAAATGATAAGCTGGATGACAAGGATGTAGGGGAGAAGAATGCAAAATTGGAAACCAAAAGCCAACAGCAGGAACCTTCTGCTGATCCCGGTGTCAAAACTTTTATAAGGAAAAAAGTTGGGAAAAAGGTCACGGAGGGCAAAACCACTCAGGATGAAAGCGTGCAACCTGAGGTAAAAATTGAGAATGAGGCACAATGTTCTGAAGATAAAAGTGAGATTAAGTCAGATCCAAGCATTGCTGCTTCAGTGCAAGGGACTGGTGTGAAAACAACTATAAAGAAGAAAATCATCAAGAGAATACCCAAAAGAAAGGTCACTGGAGTAGGGACCAATATTGCGTCTGCTGAAAGCAAAAAAGATGATGATAATGATGAGAAAAAGGTAGTTCAACAAGGGACTGAAACCAAAGATGTGTCAGAGCAAAAAGTAGAAGCAGGCAACCCAGTTTGTGAGCCTAAGATATTAGAGAAGAAAATGACACCTAAAACAAAGTCAAAAACAGCAACCTTCAGCAAGCAAGATGAGAAAACTGGCTCTGGGACTAAAGTTGAAATTAAGTCAAAAACAGCAAACTTCAGCAAGCAAGATGAGAAAATTGTCTCTGGAACCAAAGTTGAAATTGAGGCTGAGAAGCAAAAAGTTCCTCAGAAGGATAGTCAGAATGGCAACAGAGACAAATCAAAAGATCAAGAAAAGTTAAAAGATGAAAAAGAGAAAAAAGAGAAAGATGGGAAATATGATTCTCGGGGCAACAAACCTGATAAAGAGGCAAAAGAGAAGAAAAATCTTGAAGAGCCTCCAAGGCACCCTGGATTGCTTCTACAGACAAAATGGAGCAAGGACTCTAAACTGCGTTCATTGTCCCTTTCACTGGATTCGCTCTTGGGTTACACTGACAAAGATATTGAGGAACCAACATTCGAGCTTTCATTATTTGCTGAAACACTATATGAAATGCTTCAGTATCAAATGGGTTGTCGTCTTTTAACATTTCTCCAGAAACTGCGTATAAAATTTGTGATGAAAAGAAATCAACGGAAAAGACAATGGGAAGAAACCTCAGAGAAGGGCAGTGACAAAAGATCATCAACAAAGCGTCAAAAGATTGCCGAGCCCTCCATGGGAATGAAATCTACTGAATCTGAAATGCTGGATGCAGCTCATCCAAATGATGAAAAACCTGCAACCAAGGGCAAGAGTACATCTCCAATGGAAGATGAGGAAATGCAGGATGCAAACCCTCAAGATGAGAATAATGAAGAGCTAAATATACAGAATAATGAAGGGGAGGCAAAGGCCAGTGGGGATACTGAGCCTGAAAAAGTGGCAGGGATGGGAAAGGAAGAAGCTGAGGAATTTGGTAAGGAGAAAACTAACAATAAAACTTCAGGAACAAATGAAGGGACAAATCTTGGAGAAGAGAGGAAAGAAGCTCCTATCATTAATAAGGTGGCTGTTGACAAGGAGCTGCTGCAGGCTTTCAGGTTTTTTGACCGGAACCGAGTGGGCTACATTAGGGTGGAAGATATGAGGTTGATTGTTCACAACCTTGGGAACTTCCTGTCTCACAGGGATGTAAAGGAACTTGTGCAAAGTGCACTCTTAGAGAGCAACACTGGAAGGGATGATCGCATTCTTTACAATAAGCTGGTGAGAATGTCCAACATTTGA 4071 42.13 MFPSRGSNTYGQQPYAAQSGYGQNLGSAYSGSSIGGPDGGTQLSVASRHSSMLGGSQEAEIGGYRAHPSAAGHYGGQYSSLYSSALSSSQQVPASAKGVGPSTLESRSGYASAMPESPKFTSSDFVSSSTHGYGQKGDQFFSEKLSDYPSMERRQYGERQSAYVGGRELQSESSGRYADPVGFSHQHQPEIYDRVDQASLLRQEQMLKAQSLQSTSLDGGARQTDYLAARSATIRHSTQDLMPYSGRLDGDPRNLSMLSGSSYGAQHAPSILGAAPRRNVDDLMYAQSSSNPGYGVSLPPGRDYATGKGLHGTSLEPDFLSRGGHTRINERKDDREREREREREREREREKERERERERKRIFERREKERERERKRAAEVKRERTPLRISKDRRGSSLVKDERSIRRESPRHEALHRRHTPVKEKRREYACKVYSSSLVDIERDYLSMDKRYPKLFISPEFSKVVVNWPKGNLQLSFNTPVSFEHDFVEEESSPEQKEVSTKQLAEEPVESKQGSTVWNAKMILMSGLSRNALEDLSSEKSHDDRIPHICNILRFAVLKKDRSFMAIGGPWDVADGGDPSVDDDSLVQTILRYAKDVTQLDLENCQNWNRFLEIHYDRIGEDGFFSHKEVTVLFVPDLSGCLPSLDTWRDQWLAHKKAVAERTCQLSLKREKSKEKKEGLKDKEIDSTKAVKQVDKSAKTKDSASSGQADVNKKEKNGSQPKGDEADKEGNGNSDKNVVKKDVVEMSQDGKTIEKKESGGTAGSQTSGNAKSGKKKLVKKVVKQKVADKKAGTENTENEENDKLDDKDVGEKNAKLETKSQQQEPSADPGVKTFIRKKVGKKVTEGKTTQDESVQPEVKIENEAQCSEDKSEIKSDPSIAASVQGTGVKTTIKKKIIKRIPKRKVTGVGTNIASAESKKDDDNDEKKVVQQGTETKDVSEQKVEAGNPVCEPKILEKKMTPKTKSKTATFSKQDEKTGSGTKVEIKSKTANFSKQDEKIVSGTKVEIEAEKQKVPQKDSQNGNRDKSKDQEKLKDEKEKKEKDGKYDSRGNKPDKEAKEKKNLEEPPRHPGLLLQTKWSKDSKLRSLSLSLDSLLGYTDKDIEEPTFELSLFAETLYEMLQYQMGCRLLTFLQKLRIKFVMKRNQRKRQWEETSEKGSDKRSSTKRQKIAEPSMGMKSTESEMLDAAHPNDEKPATKGKSTSPMEDEEMQDANPQDENNEELNIQNNEGEAKASGDTEPEKVAGMGKEEAEEFGKEKTNNKTSGTNEGTNLGEERKEAPIINKVAVDKELLQAFRFFDRNRVGYIRVEDMRLIVHNLGNFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSNI* 1357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12478584 12504600 + Vvi1g936 Vvi1g936 770136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g936 1356 MobiDBLite consensus disorder prediction 700 714 - -
Vvi1g936 1356 PANTHER CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN 5 812 IPR025224 GO:0006355
Vvi1g936 1356 PANTHER CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN 947 1355 IPR025224 GO:0006355
Vvi1g936 1356 PANTHER CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN 790 966 IPR025224 GO:0006355
Vvi1g936 1356 MobiDBLite consensus disorder prediction 906 1076 - -
Vvi1g936 1356 SMART DBC1_2 546 671 IPR025954 -
Vvi1g936 1356 Pfam DBC1 548 663 IPR025954 -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 489 505 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 915 941 - -
Vvi1g936 1356 SUPERFAMILY EF-hand 1288 1333 IPR011992 -
Vvi1g936 1356 PANTHER CCAR1 HOMOLOG 790 966 - -
Vvi1g936 1356 PANTHER CCAR1 HOMOLOG 947 1355 - -
Vvi1g936 1356 PANTHER CCAR1 HOMOLOG 5 812 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 26 69 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 26 54 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 1216 1232 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 670 886 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 670 699 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 834 875 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 758 772 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 90 176 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 1233 1258 - -
Vvi1g936 1356 Coils Coil 363 383 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 1143 1275 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 955 982 - -
Vvi1g936 1356 Coils Coil 1023 1043 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 1184 1206 - -
Vvi1g936 1356 Coils Coil 325 361 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 1144 1167 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 784 818 - -
Vvi1g936 1356 Coils Coil 1356 1356 - -
Vvi1g936 1356 ProSiteProfiles EF-hand calcium-binding domain profile. 1285 1320 IPR002048 GO:0005509
Vvi1g936 1356 MobiDBLite consensus disorder prediction 290 421 - -
Vvi1g936 1356 Pfam BURAN domain 441 527 IPR045354 -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 489 513 - -
Vvi1g936 1356 Pfam LAIKA domain 1067 1132 IPR045353 -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 90 136 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 715 756 - -
Vvi1g936 1356 Gene3D - 1286 1355 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 323 417 - -
Vvi1g936 1356 MobiDBLite consensus disorder prediction 989 1067 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g936 K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 - vvi:100260241 1740.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g936 . Blo16g01111 . . Bpe13g01405 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0569 Cone9ag0575 . . . . . . . . . . . Bma06g00700 . . . . . . . . Cpe07g00648 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007311 0 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 2 1 1 0 1 1 1 34