Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g937 ATGGAAGCGGCCTCTTCAGTCTCTGATTTAGGGATTCTGGACTCTGTTGACGATGCCTCCATCACAGAAATTATGGAGAGCTGGGACGGTTTCTGTAGAGCCACTGAAGCTCTCCTCAACGGACACGGCGATCTCTCCGTCGGATCCGAATTCGTTTCTCACGTTCACTCTCTCTGTAAGCGCTCGCTCGGCTCTCTCGTTCAAGACCACTTTCTTCGCTCCCTGGAGGAAACTTTTGAGAGAAATGGTGCTACGAGGTTCTGGCGGCATTTTGATGCTTACACCCACGTTGAAGTTATGGAAATGAGTAAATCCCCTATTCAAGAGAATGGGATTCAGAAAGTATTATATAAAGCATTGGATGATGTGTCTTTGGAAAAACAGTATCAGGAAAAGTGCCTGTTAATGCTGGTTCATGCTTTACAGTCATACAAGGATAGTATATCAGAGGAAAGACACAACTCAGATGCAGAAAGAATCCATCTTTTTTCTAAATATCAGTTAATAGTGTCTTCAGTTCTCATGACCACGCTTCCTCGGCATTTCCCTGAGATACTCCACTGTTATTTTAAGGGAAGGTTGGAGGAGTTAAGTACAATTATGGCTGGAGAATATGAAGATGATAATGAATCTGACGACAAAGATGACATGGATTTAGATGAGAAAAATAAAGTCTCCTATAGAGGTGAAATGGATATCGATGAATGCTATCAGCGGAGAAAGTTTTTAGAGAATAACAAATTGGTGAAAAACATAGGAAAGGTGGTTCGTGATCTTAGAAATCTTGGATTTACATCCATGGCTGAAGATGCCTACGCTTCTGCTATTTTCTTGCTCTTGAAGGACAAAGTTCATAATTTGGCTGGGGATGATTACAGGAGTTCTGTTTTGGAATCTATTAAAGAGTGGATACAGGCTGTGCCTCTTCAATTCTTGTATGCACTTCTTGCTTATCTGGGTGACTCTGTTAGTTATGATAATCCTTCATCTGGTCTCAAATCACCTTTGGCTTCACATCCCTCTTCATGTTATCCTGGAATTGACACCCCCTCTGAAGGACTGATCAGATGGCAGTTGCGGCTGGAGTATTTTGCTTACGAAACATTACAAGATTTAAGAATAGCCAAACTTTTTGAGATTATTGTGGATTACCCTGACAGTTCTCCTGCTATTGAAGACTTAAAACAGTGTCTTGAATACACTGGACAACATTCCAAGTTGGTTGATTCATTTATATCTGCATTACGATATCGCTTGCTCACTGCTGGTGCCTCAACCAATGATATATTACACCAATATGTTTCAACTATTAAAGCACTGAGGACCATAGACCCAGCAGGTGTTTTTCTTGAAGCAGTGGGTGAACCAATAAGGGACTATCTAAGGGGAAGAAAAGATACCATAAAATGCATTGTGACCATGCTTACAGATGGGACTGGTGGGAATCCAAATGGACCTGGAAATACTGGTGATAGCCTTCTTGAAGAATTAAATAGAGATGAAGAAAATCAAGAGAATGCTGGTATTGATGATGACTTCAACATTGATGAAAAGCAAGACTGGATCAATGCAGAACGCTGGGAGCCTGACCCAGTAGAGGCTGACCCATCGAAGGGTAGCAGGAACCGGAGGAAGGTTGACATACTTGGGATGATTGTTGGCATAATTGGTTCGAAGGATCAGCTAGTTAATGAATATCGTGTTATGCTGGCTGAAAAGCTTTTGAACAAATCTGATTATGACATTGACTCAGAGATACGTACTTTAGAACTCCTAAAGATACATTTTGGGGAGAGCAGCATGCAGAGGTGTGAGATTATGCTCAATGATTTGATTGATTCCAAAAGGACAAACTCCAATATAAAAGCAACCATAACTCAGCCATCCCAAATAGGTTCTGAGCTAGGAGAAACTGGGGTGTCTCTGGATATTCTGGATGCTACAATCATATCATCAAATTTCTGGCCGCCAATCCAGGATGAGGCTCTTAACATACCTGGGCCTGTGGACCAGCTGCTTGCTGATTATGCGAAAAGGTTTCACAAAATCAAAACTCCTCGAAAGCTACTATGGAAGAAAAATCTTGGTACAGTCAAGCTGGAGTTGCAATTTGAGGGTAGAGTGGTGCAGTTCACAGTGGCTCCTTTGCATGCAGCAATTATAATGCAATTCCAAGATCAAACAAGTTGGACCTCTAAGAATCTTGCAGCTTCTATTGGGGTACCTGTGGATGTACTTAATCGTAGGATAAATTTCTGGATAAGCAAGGGAATTCTCTCGGAATCACTGGTAACAGATCCTAATGACCACATATTTACCCTAGTGGATGATATGGTTGAGCCCGGTAAGAATAGTGTTAATGCTGGGAGCTGTGAGGAGCTTCTTGTATGTGATGAGGAAGGGGAGAGATCTGTAGCCTCTGTTGAGGATCAATTGCATAAAGAAATGATTGTGTATGAGAAATTTATCATGGGGATGCTCACAAATTTTGGCAGCATGGCATTGGATCGGATTCATAATACTCTTAAGATGTTTTGTTTAGCTGATCCTCCTTACGACAAATCACTGCAACAACTGCAAAGCTTCTTATCTGGTCTTGTTTCAGAAGAGAAATTAGAAATAAGAGATGGAATGTACTTTCTAAAGAAATAG 2652 41.21 MEAASSVSDLGILDSVDDASITEIMESWDGFCRATEALLNGHGDLSVGSEFVSHVHSLCKRSLGSLVQDHFLRSLEETFERNGATRFWRHFDAYTHVEVMEMSKSPIQENGIQKVLYKALDDVSLEKQYQEKCLLMLVHALQSYKDSISEERHNSDAERIHLFSKYQLIVSSVLMTTLPRHFPEILHCYFKGRLEELSTIMAGEYEDDNESDDKDDMDLDEKNKVSYRGEMDIDECYQRRKFLENNKLVKNIGKVVRDLRNLGFTSMAEDAYASAIFLLLKDKVHNLAGDDYRSSVLESIKEWIQAVPLQFLYALLAYLGDSVSYDNPSSGLKSPLASHPSSCYPGIDTPSEGLIRWQLRLEYFAYETLQDLRIAKLFEIIVDYPDSSPAIEDLKQCLEYTGQHSKLVDSFISALRYRLLTAGASTNDILHQYVSTIKALRTIDPAGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGPGNTGDSLLEELNRDEENQENAGIDDDFNIDEKQDWINAERWEPDPVEADPSKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNSNIKATITQPSQIGSELGETGVSLDILDATIISSNFWPPIQDEALNIPGPVDQLLADYAKRFHKIKTPRKLLWKKNLGTVKLELQFEGRVVQFTVAPLHAAIIMQFQDQTSWTSKNLAASIGVPVDVLNRRINFWISKGILSESLVTDPNDHIFTLVDDMVEPGKNSVNAGSCEELLVCDEEGERSVASVEDQLHKEMIVYEKFIMGMLTNFGSMALDRIHNTLKMFCLADPPYDKSLQQLQSFLSGLVSEEKLEIRDGMYFLKK* 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12552046 12562188 - Vvi1g937 Vvi1g937 770137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g937 883 SMART APC2_2 822 881 IPR014786 -
Vvi1g937 883 SMART cul_2 547 704 IPR016158 -
Vvi1g937 883 Pfam Anaphase promoting complex (APC) subunit 2 822 879 IPR014786 -
Vvi1g937 883 Gene3D - 798 883 IPR036388 -
Vvi1g937 883 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 13 883 IPR044554 -
Vvi1g937 883 SUPERFAMILY Winged helix DNA-binding domain 812 882 IPR036390 -
Vvi1g937 883 Gene3D Cullin; Chain C, Domain 2 644 784 - -
Vvi1g937 883 Gene3D Cullin Repeats 510 627 - -
Vvi1g937 883 PANTHER BNAC04G32030D PROTEIN 13 883 - -
Vvi1g937 883 SUPERFAMILY Cullin homology domain 525 776 IPR036317 -
Vvi1g937 883 ProSiteProfiles Cullin family profile. 551 754 IPR016158 -
Vvi1g937 883 Pfam Cullin family 549 752 IPR001373 GO:0006511|GO:0031625
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g937 K03349 APC2, ANAPC2; anaphase-promoting complex subunit 2 - vvi:100263601 1710.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g937 . Blo16g01110 . Bda11g01210 Bpe13g01404 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0944 Cone19ag0936 . . . . . . . . . Bda11g01210 . . . Bma06g00701 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010260 1 2 1 2 1 1 1 1 1 1 1 1 1 0 1 1 1 2 0 1 1 0 2 1 1 1 1 1 1 1 31