Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g948 ATGAGAGAACTTACTAAGATGTGGGCTGTATCAGACTCAGTTGCAGAGGCCTTTTATCCTCCCAATAAACCAGTAATCCAGGTTATTGCTGTTTCAGATCATGGTTTCTTATCTTTACATCACCAAAAGAAACCACCCTTTGTTGAGATTCGTAGTTCTCTGCATTTACTTGAGAGAATAGTTTGCTCTGGTAAGTGTAATGAGCCTGTTCTGTTTGTTGGTGAAACAGGTACAGGGAAGACCACACTTGTACAGAATTTGTCCATGAGGATTGATCAGAAACTTACTAATTTGAGTCAGCAAAGTGATGTGGCAGATTTGTTAGGGGGATTTAAGCCTATGGATGCATGGTTTGTTTGCATCCCTCTTTATAAGGAGTTTGAAAATCTGTTCTCTAATACGTTTTCTGTGAAGAAGTCAGCTGAGATAGGAAAGTCTGGTTTGCTCTATATAAAGAGCAATGCAATGAATAAAAATACACTTCCAGATACCAAGTTTTTCTTTACTGGAAAAATTTGTTTTTCCTTTGCTAGCAATGCAATGAATAAAAATACACTTCCAGATACCAAGTTTTTCTTTACTGGAAAAATTTGTTTTTCCTTTGCTGTCATAAATTTCTGCCCTGTTCTTGTGCCATATATCAACATATTTCAATTTGTGGAAGGGGCTTTTGTGACTGCACTTCGAAATGGTGACTGGATTTTGCTTGATGAGGTGAATTTAGCTCCCCCAGAGGAAAGATATCTCCACAAATACCTTTTTGATGAATACTTGATGGCTAGGGGAAACACAAGCTCTGGTGATTTCTTGGAGAACTATATTCTAATCAGGAACCTAGCTCGTGCTGTTTTGATTAAACGATATCCTGTTCTCTTACAGGGTCCCACCTCAAGTGGAAAGACGAGTCTTGTGCAGTATCTTGCTGCAATAACCAGCCATGAATTTGTATGGATCAATAATCATGAACACACAGACGTTCAAGAATACTTAGGTTCCTATGTGACTGATGCTAGTGGGAAGCTAGTCTTTCATGAAGGTGTATTGGTTAAGGCCTTGAACCAATTGTTGGATGACAACAGAGAGCTTTTTGTGCCTGAATTACGAGAAACAATGCCAGCACAACTAGATTTTATGCCTTTTTCTACTCTAAATCCCCCTACTCTCTATGGAGGACATAAAATGCTTTCTCGAGCATTTCGTAACCGTTTTGTGGAGAGTCATGTTGATGAGATCCCAGAAGATGAGTTGAGCACGATATTAAACAATTGGTGCAAAATCTCTGAAAGTTATGTGAAGATAATGGTTGAAGTTATGAAGGAGTTGAAGTTGCATCGACAGAGTAGTGAAGTGTTTGCTGGAAAACATGGATTCATAACTCTTATAGACTTATTTTGGTGGGCTGATCATTTCAGGACATTTGGGAATTCAAATGAAGATTTGGCCAGAGATGGTTATTATCTTTTGGCAGAAACATTCAAAGATGAGGGCGAGAAAAAGGTTGTTCAAGCAGTTTTAGCGAAACATCTCCAGGTTAAACTACTCAAAGATAACTTGTACCATCAGAACAAGCAGTCGCTGGACCTCTCAGAGAAAGGTATAAAAATCCAACATATACATAATTCCTCAAGTGGGAATTGTCCCTACAAGAACCTCAGGGATAATGCTTTCTATTGGTTAGCTCATCTATTAATTGTGTTGCTAATTGTGTTAAGTGTTCACCATACCCTTGGAAAGGTCCATAGCTCTTCTGATACTGAGGTCAAAATGCCAAGGTCCTCTGTTTTTGGAGGAGACTCAAGAGATGACAACCAAGAAATTCCCTCTATATTAAGATTCATGATTGCCATAAGAGATGGTTCAAAATGGCAGACCCTTTTTATGTGGCAAGATGGACCTCTTGTACAAGCAATGAAGGATGGTGATATGTTTCTTGTTGATGAAATCTCCTTGGCTGATGATAGCGTACTTGAACAATTGAATAATGTCTTGGAGCCAGAAAGGAAACTGGCGGGGCCTGCTGCTTTTTTCCCCATCCACTATCACTACTCTTGCTATCGGTACCATTACTTATGA 2073 39.07 MRELTKMWAVSDSVAEAFYPPNKPVIQVIAVSDHGFLSLHHQKKPPFVEIRSSLHLLERIVCSGKCNEPVLFVGETGTGKTTLVQNLSMRIDQKLTNLSQQSDVADLLGGFKPMDAWFVCIPLYKEFENLFSNTFSVKKSAEIGKSGLLYIKSNAMNKNTLPDTKFFFTGKICFSFASNAMNKNTLPDTKFFFTGKICFSFAVINFCPVLVPYINIFQFVEGAFVTALRNGDWILLDEVNLAPPEERYLHKYLFDEYLMARGNTSSGDFLENYILIRNLARAVLIKRYPVLLQGPTSSGKTSLVQYLAAITSHEFVWINNHEHTDVQEYLGSYVTDASGKLVFHEGVLVKALNQLLDDNRELFVPELRETMPAQLDFMPFSTLNPPTLYGGHKMLSRAFRNRFVESHVDEIPEDELSTILNNWCKISESYVKIMVEVMKELKLHRQSSEVFAGKHGFITLIDLFWWADHFRTFGNSNEDLARDGYYLLAETFKDEGEKKVVQAVLAKHLQVKLLKDNLYHQNKQSLDLSEKGIKIQHIHNSSSGNCPYKNLRDNAFYWLAHLLIVLLIVLSVHHTLGKVHSSSDTEVKMPRSSVFGGDSRDDNQEIPSILRFMIAIRDGSKWQTLFMWQDGPLVQAMKDGDMFLVDEISLADDSVLEQLNNVLEPERKLAGPAAFFPIHYHYSCYRYHYL* 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13745872 13755481 - Vvi1g948 Vvi1g948 770148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g948 690 Gene3D - 53 257 IPR027417 -
Vvi1g948 690 Gene3D - 274 421 IPR027417 -
Vvi1g948 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 438 IPR027417 -
Vvi1g948 690 ProSitePatterns Sigma-54 interaction domain ATP-binding region A signature. 70 83 IPR025662 -
Vvi1g948 690 PANTHER MIDASIN 41 669 - -
Vvi1g948 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 245 IPR027417 -
Vvi1g948 690 PANTHER MIDASIN-RELATED 41 669 - -
Vvi1g948 690 Pfam AAA domain (dynein-related subfamily) 627 667 IPR011704 GO:0005524|GO:0016887
Vvi1g948 690 Pfam AAA domain (dynein-related subfamily) 289 352 IPR011704 GO:0005524|GO:0016887
Vvi1g948 690 Pfam Midasin AAA lid domain 415 511 IPR040848 -
Vvi1g948 690 Gene3D - 579 677 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g948 K14572 MDN1, REA1; midasin - vvi:100244657 442.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g948 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .