Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g95 ATGGCTGAATCCTTTGCATTTAACATTGCTGATAAGCTTCTGGGGAAGGCCACCTCCCTTGTTGTCGAGCAAGTCTGCCTTGCAGGGGGTGTCTACAGCGAGCTGGAAAATATCAAGGCCACCTTATCCACTGTCAGAGCCGTGCTCTTGGATGCGGAGGAGCAGCAAGTCAACAACCATCAGCTCACTGATTGGCTCGGGAAGCTCAAGGATTGCTTTTATGATGCAGAAGATATGGGTAATAAGATGAAGGAGATTAGAGAGAGATTAGATAAGGTCGCAGCTGATGCGGATAAATTTAATCTCAAGAAAATGGGTGTCAATGTGCCTGTGCCTGTCCTGAATAGGAAGAGGGAGAACTACTCCTTTGTGCGTGCTTCCGATGTCATCGGAAGGGATGATGATAAAGAAAATATTATACAGCTTCTGATGCAATCAAGCGATGAGGAAAATGTTTCTGTTCTTCCCTTGGTTGGAATCGGTGGTCTTGGCAAGACTACTCTGGCCAAATTAGTATATAATGATGGGAGAAATCGAGATAAATGGCTTGAGTTAAAAGCCTTGCTAGATGGTGGTGCTAAGGGAAGTAAAATAATTGTCACCACACGTGATAAATTGGTAGCCTTCTGTTTGTCTCTATTTATTACATATTGGTTGAGAGTGCGAGATAGCGAAATTTGGAAACTAGAGCAAAAGAAAGATGATGTTTTGCCCGCATTGAAACTAAGCTACGATGAATTGCCATTTGATTTAAAGCAATGTTTTGCATTTTGTTCCCTTTATCCAAAAGATTTTGAATTCCTTAACATTACTTTGATTGAAATGTGGATGGGGCAAGGCTTGATTCGACCATCAGAACAAAACGAAGAGATGGAAGATATTGGCCATCGATACATTGATGAATTATTACAAAAATCATTCTTTCAAGATGTCGAGGAAGATATTCCGGGATTCTTTTATAGTTTCAAAATGCATGATCTTGTACATGATCTTGCGTTATTGGTGGCACAACCTGAGTGTAGCATGTTAAATTTTGATAGTGAAAACATTTCTACAAAAGTTCGACATAGACTCCCGAATTCTATTTGCAAATTGCACCATTTGCAAACATTGAATCTACTTGGATACTGCTCAGAACTCTTAGCTCTACCTGAGGGAATGGGTCACCTCACTGCATTAAGACAACTGCAGATTGAACGCTGTCCTAAATTGGCTGAAAGATGCAAACCAAGAACAGGTGAAGACTGGAACAAGATTGCTCATGTAAAAGATATATATCTTAATGGCCAAAAGATTCAGGTAACATAA 1308 40.29 MAESFAFNIADKLLGKATSLVVEQVCLAGGVYSELENIKATLSTVRAVLLDAEEQQVNNHQLTDWLGKLKDCFYDAEDMGNKMKEIRERLDKVAADADKFNLKKMGVNVPVPVLNRKRENYSFVRASDVIGRDDDKENIIQLLMQSSDEENVSVLPLVGIGGLGKTTLAKLVYNDGRNRDKWLELKALLDGGAKGSKIIVTTRDKLVAFCLSLFITYWLRVRDSEIWKLEQKKDDVLPALKLSYDELPFDLKQCFAFCSLYPKDFEFLNITLIEMWMGQGLIRPSEQNEEMEDIGHRYIDELLQKSFFQDVEEDIPGFFYSFKMHDLVHDLALLVAQPECSMLNFDSENISTKVRHRLPNSICKLHHLQTLNLLGYCSELLALPEGMGHLTALRQLQIERCPKLAERCKPRTGEDWNKIAHVKDIYLNGQKIQVT* 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 972355 975005 - Vvi1g95 Vvi1g95 769295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g95 435 Gene3D - 113 183 IPR027417 -
Vvi1g95 435 Coils Coil 76 103 - -
Vvi1g95 435 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 216 343 - -
Vvi1g95 435 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 214 - -
Vvi1g95 435 Pfam Rx N-terminal domain 12 79 IPR041118 -
Vvi1g95 435 Gene3D Ribonuclease Inhibitor 331 418 IPR032675 -
Vvi1g95 435 PANTHER DISEASE RESISTANCE PROTEIN RP 216 343 IPR044974 GO:0006952
Vvi1g95 435 PANTHER DISEASE RESISTANCE PROTEIN RP 6 214 IPR044974 GO:0006952
Vvi1g95 435 SUPERFAMILY RNI-like 342 406 - -
Vvi1g95 435 Coils Coil 35 55 - -
Vvi1g95 435 Pfam NB-ARC domain 133 175 IPR002182 GO:0043531
Vvi1g95 435 PRINTS Disease resistance protein signature 154 169 - -
Vvi1g95 435 PRINTS Disease resistance protein signature 388 404 - -
Vvi1g95 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 258 IPR027417 -
Vvi1g95 435 Gene3D - 11 105 - -
Vvi1g95 435 Gene3D - 238 330 IPR036388 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g95 - - vvi:104877428 556.599