Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g95 ATGGCTGAATCCTTTGCATTTAACATTGCTGATAAGCTTCTGGGGAAGGCCACCTCCCTTGTTGTCGAGCAAGTCTGCCTTGCAGGGGGTGTCTACAGCGAGCTGGAAAATATCAAGGCCACCTTATCCACTGTCAGAGCCGTGCTCTTGGATGCGGAGGAGCAGCAAGTCAACAACCATCAGCTCACTGATTGGCTCGGGAAGCTCAAGGATTGCTTTTATGATGCAGAAGATATGGGTAATAAGATGAAGGAGATTAGAGAGAGATTAGATAAGGTCGCAGCTGATGCGGATAAATTTAATCTCAAGAAAATGGGTGTCAATGTGCCTGTGCCTGTCCTGAATAGGAAGAGGGAGAACTACTCCTTTGTGCGTGCTTCCGATGTCATCGGAAGGGATGATGATAAAGAAAATATTATACAGCTTCTGATGCAATCAAGCGATGAGGAAAATGTTTCTGTTCTTCCCTTGGTTGGAATCGGTGGTCTTGGCAAGACTACTCTGGCCAAATTAGTATATAATGATGGGAGAAATCGAGATAAATGGCTTGAGTTAAAAGCCTTGCTAGATGGTGGTGCTAAGGGAAGTAAAATAATTGTCACCACACGTGATAAATTGGTAGCCTTCTGTTTGTCTCTATTTATTACATATTGGTTGAGAGTGCGAGATAGCGAAATTTGGAAACTAGAGCAAAAGAAAGATGATGTTTTGCCCGCATTGAAACTAAGCTACGATGAATTGCCATTTGATTTAAAGCAATGTTTTGCATTTTGTTCCCTTTATCCAAAAGATTTTGAATTCCTTAACATTACTTTGATTGAAATGTGGATGGGGCAAGGCTTGATTCGACCATCAGAACAAAACGAAGAGATGGAAGATATTGGCCATCGATACATTGATGAATTATTACAAAAATCATTCTTTCAAGATGTCGAGGAAGATATTCCGGGATTCTTTTATAGTTTCAAAATGCATGATCTTGTACATGATCTTGCGTTATTGGTGGCACAACCTGAGTGTAGCATGTTAAATTTTGATAGTGAAAACATTTCTACAAAAGTTCGACATAGACTCCCGAATTCTATTTGCAAATTGCACCATTTGCAAACATTGAATCTACTTGGATACTGCTCAGAACTCTTAGCTCTACCTGAGGGAATGGGTCACCTCACTGCATTAAGACAACTGCAGATTGAACGCTGTCCTAAATTGGCTGAAAGATGCAAACCAAGAACAGGTGAAGACTGGAACAAGATTGCTCATGTAAAAGATATATATCTTAATGGCCAAAAGATTCAGGTAACATAA 1308 40.29 MAESFAFNIADKLLGKATSLVVEQVCLAGGVYSELENIKATLSTVRAVLLDAEEQQVNNHQLTDWLGKLKDCFYDAEDMGNKMKEIRERLDKVAADADKFNLKKMGVNVPVPVLNRKRENYSFVRASDVIGRDDDKENIIQLLMQSSDEENVSVLPLVGIGGLGKTTLAKLVYNDGRNRDKWLELKALLDGGAKGSKIIVTTRDKLVAFCLSLFITYWLRVRDSEIWKLEQKKDDVLPALKLSYDELPFDLKQCFAFCSLYPKDFEFLNITLIEMWMGQGLIRPSEQNEEMEDIGHRYIDELLQKSFFQDVEEDIPGFFYSFKMHDLVHDLALLVAQPECSMLNFDSENISTKVRHRLPNSICKLHHLQTLNLLGYCSELLALPEGMGHLTALRQLQIERCPKLAERCKPRTGEDWNKIAHVKDIYLNGQKIQVT* 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 972355 975005 - Vvi1g95 Vvi1g95 769295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g95 435 Gene3D - 113 183 IPR027417 -
Vvi1g95 435 Coils Coil 76 103 - -
Vvi1g95 435 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 216 343 - -
Vvi1g95 435 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 214 - -
Vvi1g95 435 Pfam Rx N-terminal domain 12 79 IPR041118 -
Vvi1g95 435 Gene3D Ribonuclease Inhibitor 331 418 IPR032675 -
Vvi1g95 435 PANTHER DISEASE RESISTANCE PROTEIN RP 216 343 IPR044974 GO:0006952
Vvi1g95 435 PANTHER DISEASE RESISTANCE PROTEIN RP 6 214 IPR044974 GO:0006952
Vvi1g95 435 SUPERFAMILY RNI-like 342 406 - -
Vvi1g95 435 Coils Coil 35 55 - -
Vvi1g95 435 Pfam NB-ARC domain 133 175 IPR002182 GO:0043531
Vvi1g95 435 PRINTS Disease resistance protein signature 154 169 - -
Vvi1g95 435 PRINTS Disease resistance protein signature 388 404 - -
Vvi1g95 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 258 IPR027417 -
Vvi1g95 435 Gene3D - 11 105 - -
Vvi1g95 435 Gene3D - 238 330 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g95 - - - vvi:104877428 556.599
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g95 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000051 6 23 7 10 2 4 0 7 4 28 5 5 3 17 26 13 6 8 8 7 12 4 8 25 7 8 9 11 18 22 313