Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g952 ATGGAAGAAACAGATAAGTCCAATGCTAACAAGAAATGCACTCCCAAAGGCAGGAGTTTCAGTGGAAGGACCAACCCTAATGATCATCAGTTGTTTCAATACTCAAATCCTTTTAGGTTCTCTAACCAGAACCAGTACCGGAGCTACTCAGCTCTTCTTCCTCCGCCTCCTCCCATACCTCTGCAACCCACTGCAACTCCACCTCTGCCTCAAAACCAGAACTTTAGATCAAAAGCCCATTTGCAGAAACCTTCATGGAAGCATGACAACCCCCCTCGTGCCACCTCGTCGGATACCCAGGTCTCACTACTCACAGTATCAACAGAGGACACCGAGCGGCGAGCCAGTTTCTCCCCCAGAGGAGAAAATGGAAGGAAGGTCATGGCTGCCACACAAGCAATGGTGACTGCAAGAAGACCAGATTCTGGTGGAATAGAAGGGCCAGTTATATCTCTTCTTGCAAACCATTTTCTTGTCCAGTTTGATTCTTCGCAGAGAATATTCCATTATGATGTTGAGATCTCTCCAAATCCTTCTAAGGAAGTGGCTCGAATGATCAAGAGAAAACTAGTCGAGGAGAAGTCTGTTGAGCTCTCTGGTGCTCTTCCTGCCTTTGATGGGCGAAAGAATCTCTACAGCCCAGTCGAATTCCAAAATGACAGGCTTGAACTATTTATTGAAAAGCATCCACAGATTAAGCTCTTCCGCATAAACATCAAACTTGTATCAAAATTTGATGGGAAGGAATTGAATAGCTACTTGAGCAAAGAGGGAGATGATTGGATTCCACTTCCTCAGGATTATCTTCATGCTCTAGATATTGTTTTGAGGGAGAGCCCAACTGAGAAGTGTGTGCCTGTGGGTAGATCACTGTACTCGAGTTCAATGGGAGGGACTAAAGAAATTGGAGGAGGGGCGGTTGGATTAAGAGGGTTCTTTCAGAGTCTTAGACCAACCCAGCAAGGACTTGCTCTCAATGTGGATTTTTCAGTGACCGCATTCCATGAGAGCATAGGAATAATACCCTACTTGCAGAAGCGTGTTGAGTTTCTTCGAGACCTTTCCCAGAGGAAGACAAGAGGTTTGACGGGCGAAGAAAGGAAAGAAGTGGAGAAGGCATTGAAGAATATCAGGGTCTTCGTATGTCATAGAGAAACTGTTCAGAGATATCGGGTGCATAGCTTAACGGAGGAAACTACGGAAAATCTCTGGTTCAAAGACAGGGATGGGAAGATTCTGAGGCTGGTGAATTACTTCAAGGATCACTATAGCTACGATATACAGTTCAGGAATTTACCATGCTTGCAGATTACAAGTAGCAAACCATGCTATCTTCCTATGGAGCTTTGTATGATCTGTGAAGGCCAAAAATTTCTTGGGAAGCTATCTGATGATCAAACTGCAAGAATACTTAAAATGGGCTGCCAGAGACCAAGAGAACGAAAAGCCATTATTGATGGGGTCATGAGAGGAGCGGTTGGGCCAACGAGTGGCAGCCAGGAAAGAGAATTCAAACTTGATGTTTCAAGAGAAATGACACGATTGAATGGGAGAGTTCTGGAACCTCCTAAGCTAAAACTTGGTGACGGTGGGCATGTAAGAGATCTAATTCCTTCCCGTCATGATCGGCAGTGGAACCTTTTGGACAGTCATGTGTTTGAAGGGACTCACATAGAAAGGTGGGCACTGATTAGCTTTGGTGGCACTCCAGATCAGAAATCTAATATTCCCAGATTCATAATCCAGCTATCTCAAAGGTGTGAACAATTGGGCATCCTTCTTAACAAAAACACCATCATGAGCCCCCAGTTTGAACCAATCCAAGTTCTCAACAATGTCTCCCTTTTGGAATCTAAACTCAAGAAAATCCACAGAACTGCATTGAATAATCTCCAGCTTCTTATGTGCATAATGGAGAGAAAGCACAAAGGGTATGCAGATTTGAAGCGAATTGCTGAGACCAGCATTGGGATCCCGCGCCTCCTTCGCCCCGATGAGCCAGTCATCTTCATGGGTGCTGATGTGACTCATCCTCATCCGCTTGATGATTTCAGCCCCTCTATTGCAGCCGTGGTTGGGAGCATGAACTGGCCATCAGCTAACAAGTATGTTTCAAGAATGAGGTCCCAGACCCATCGTCAAGAAATTATCCAGGATCTTGGTGCTATGGTCGGAGAAATACTGGATGATTTTTATCAGCAAGTTTCCCAACTCCCCAAGAGGATAATTTTTTTCAGGGATGGAGTCAGCGAAACCCAGTTCTATAAGGTGCTCCAAGAGGAGTTGCAAGCGATAAGAGTGGCTTGCTCTAGATTTCCCAGTTACAGACCTCCCATTACTTTTGCAGTGGTTCAGAAGAGGCACCACACGAGATTCCGACCAACCCATTATCATGTCTTATGGGATGACAACCATTTCACTTCTGATGAACTCCAGAAGCTGGTTTACAATCTATGCTACACATTTGTGAGATGTACCAAACCGGTTTCGTTGGTGCCCCCAGCTTACTACGCCCACCTGGCTGCATACCGAGGCAGACTATACCTGGAGCGTTCAGAATTCACAGCATTGGCTAGAAGCACTAGCGCACTCTCCCGAGCAGCCCCTCCTAAGACAGCTCCTCTGCCCAAACTTAGCGAGAATGTTAAGAAACTGATGTTCTATTGCTGA 2670 45.54 MEETDKSNANKKCTPKGRSFSGRTNPNDHQLFQYSNPFRFSNQNQYRSYSALLPPPPPIPLQPTATPPLPQNQNFRSKAHLQKPSWKHDNPPRATSSDTQVSLLTVSTEDTERRASFSPRGENGRKVMAATQAMVTARRPDSGGIEGPVISLLANHFLVQFDSSQRIFHYDVEISPNPSKEVARMIKRKLVEEKSVELSGALPAFDGRKNLYSPVEFQNDRLELFIEKHPQIKLFRINIKLVSKFDGKELNSYLSKEGDDWIPLPQDYLHALDIVLRESPTEKCVPVGRSLYSSSMGGTKEIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGIIPYLQKRVEFLRDLSQRKTRGLTGEERKEVEKALKNIRVFVCHRETVQRYRVHSLTEETTENLWFKDRDGKILRLVNYFKDHYSYDIQFRNLPCLQITSSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPRERKAIIDGVMRGAVGPTSGSQEREFKLDVSREMTRLNGRVLEPPKLKLGDGGHVRDLIPSRHDRQWNLLDSHVFEGTHIERWALISFGGTPDQKSNIPRFIIQLSQRCEQLGILLNKNTIMSPQFEPIQVLNNVSLLESKLKKIHRTALNNLQLLMCIMERKHKGYADLKRIAETSIGIPRLLRPDEPVIFMGADVTHPHPLDDFSPSIAAVVGSMNWPSANKYVSRMRSQTHRQEIIQDLGAMVGEILDDFYQQVSQLPKRIIFFRDGVSETQFYKVLQEELQAIRVACSRFPSYRPPITFAVVQKRHHTRFRPTHYHVLWDDNHFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSEFTALARSTSALSRAAPPKTAPLPKLSENVKKLMFYC* 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13829610 13833472 + Vvi1g952 Vvi1g952 770152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g952 889 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 793 888 - -
Vvi1g952 889 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 659 792 - -
Vvi1g952 889 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 84 658 - -
Vvi1g952 889 SMART DUF1785_2 285 337 IPR014811 -
Vvi1g952 889 Gene3D - 663 793 IPR036397 GO:0003676
Vvi1g952 889 Pfam PAZ domain 349 470 IPR003100 GO:0005515
Vvi1g952 889 Gene3D - 794 889 IPR036397 GO:0003676
Vvi1g952 889 MobiDBLite consensus disorder prediction 51 67 - -
Vvi1g952 889 MobiDBLite consensus disorder prediction 13 50 - -
Vvi1g952 889 CDD PAZ_argonaute_like 348 453 - -
Vvi1g952 889 Pfam N-terminal domain of argonaute 150 276 IPR032474 -
Vvi1g952 889 PANTHER PROTEIN ARGONAUTE 7 659 792 - -
Vvi1g952 889 PANTHER PROTEIN ARGONAUTE 7 793 888 - -
Vvi1g952 889 PANTHER PROTEIN ARGONAUTE 7 84 658 - -
Vvi1g952 889 SUPERFAMILY PAZ domain 332 490 IPR036085 GO:0005515
Vvi1g952 889 Gene3D paz domain 340 457 - -
Vvi1g952 889 MobiDBLite consensus disorder prediction 89 112 - -
Vvi1g952 889 MobiDBLite consensus disorder prediction 1 122 - -
Vvi1g952 889 SMART Piwi_a_2 633 850 IPR003165 GO:0003676
Vvi1g952 889 Pfam Piwi domain 793 847 IPR003165 GO:0003676
Vvi1g952 889 Pfam Piwi domain 666 792 IPR003165 GO:0003676
Vvi1g952 889 Pfam Argonaute linker 1 domain 286 335 IPR014811 -
Vvi1g952 889 Gene3D - 519 662 - -
Vvi1g952 889 SMART PAZ_2_a_3 345 485 IPR003100 GO:0005515
Vvi1g952 889 ProSiteProfiles Piwi domain profile. 669 850 IPR003165 GO:0003676
Vvi1g952 889 ProSiteProfiles PAZ domain profile. 345 454 IPR003100 GO:0005515
Vvi1g952 889 SUPERFAMILY Ribonuclease H-like 621 850 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g952 K11593 ELF2C, AGO; eukaryotic translation initiation factor 2C - vvi:100264433 1657.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g952 . . . . . . . Bma15g00144 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00918 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007995 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 35