Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g955 ATGAGTGAGGTTTTCGAAGGATATGAGCGTCAGTACTGCGAACTTTCCACGAACCTGTCCAGAAAGTGTACCTCAGCAAGCGTTCTTGATGGGGAGGAAAAACATCAGAAGATTTCTGAAATAGAAGCTGGATTGGAAGAAGCTGTCATTTTGATTCGGAAAATGGACCTTGAGGCAAGAAGTTTGCAGGCGGGTGTGAAGGCCATGCTCCTTGCTAAGTTAAGGGAATATAAAGCTGATCTTAATAAGTTGAAAAAGGAAGTCAAAAAAATTACATCTCCTGACACGAATCAGGTTGCTCGTGAAGAGTTGTTGGAGTCTGGTATGGTGGATGCGCATATGGTTTCTGCTGACCAAAAAGGAAGGCTAGCAATGTCCACAGAGAAATTAAATGAGTCAAGTGACAGAATTAAGGAGAGTAGAAGAACCATGCTGGAGACAGAGGATCTTGGTGTCTCTATCCTTCAAGATTTGCATCAACAGCGGCAAACTCTCCTACATGCGCATGAGAAGCTTCATGGTGTCGACAATGCCATTGACAAGAGCAAGAAAATCTTAACTGCCATGTCGAAGAGGATGAGCAGGAACAAATGGATTGTTGGATCAGTAATTTCAGCTCTTGTCCTTGCAATAATTTTCATACTATATTTCAAGCTTTCTTGA 663 42.23 MSEVFEGYERQYCELSTNLSRKCTSASVLDGEEKHQKISEIEAGLEEAVILIRKMDLEARSLQAGVKAMLLAKLREYKADLNKLKKEVKKITSPDTNQVAREELLESGMVDAHMVSADQKGRLAMSTEKLNESSDRIKESRRTMLETEDLGVSILQDLHQQRQTLLHAHEKLHGVDNAIDKSKKILTAMSKRMSRNKWIVGSVISALVLAIIFILYFKLS* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13887516 13910631 + Vvi1g955 Vvi1g955 770155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g955 220 Coils Coil 67 87 - -
Vvi1g955 220 Gene3D - 117 197 - -
Vvi1g955 220 SUPERFAMILY SNARE fusion complex 130 189 - -
Vvi1g955 220 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 220 - -
Vvi1g955 220 Pfam Snare region anchored in the vesicle membrane C-terminus 128 193 - -
Vvi1g955 220 Pfam Vesicle transport v-SNARE protein N-terminus 12 90 IPR007705 GO:0006886|GO:0016020
Vvi1g955 220 SUPERFAMILY t-snare proteins 6 92 IPR010989 GO:0016020|GO:0016192
Vvi1g955 220 CDD SNARE_Vti1 127 187 - -
Vvi1g955 220 PANTHER VESICLE TRANSPORT V-SNARE 13-LIKE 1 220 - -
Vvi1g955 220 PIRSF Membrin-2 1 218 IPR027027 GO:0005484|GO:0005794|GO:0016192
Vvi1g955 220 Gene3D - 1 98 IPR038407 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g955 K08493 VTI1; vesicle transport through interaction with t-SNAREs 1 - vvi:100259152 419.853
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g955 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g00895 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000886 2 4 5 2 3 2 4 1 1 2 2 2 2 3 4 3 2 4 4 2 3 2 3 3 3 3 3 7 4 3 88