Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g958 | ATGAGTTGCAGAGACGACAATTCCGGTGGCCACTCCTCGACGTCTGCCGCCGGGAAAGACAAGGCCTCTGATAAGCAGAAGGAGAAGGCCCGGGTGAGCAGGACTTCTCTCATACTCTGGCACGCTCACCAAAACGACGCCGCTGCCGTCCGCAAGCTTCTCGAGGAGGATCAGTCTCTTGTTCACGCCAGGGATTATGATAGTAGGACTCCGCTTCATGTTGCTTCTCTCCATGGTTGGATCGATGTAGCCAAGTGTTTGATTGAGTTCGGCGCTGACGTCAACGCCCAAGATCGATGGAAGAACACGCCTCTTGCTGATGCAGAAGGAGCTAAAAAACACAGCATGATAGAGCTGCTAAAATCATATGGCGGCTTGTCTTATGGACAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCACCTCCTCTACCAAACAAGTGTGACTGGGAGATTGACCCTTCCGAGTTGGACTTCTCAAACTCTAGTATTATTGGAAAGGGCTCTTTTGGTGAGATTTTAAAGGCCTGTTGGCGTGGAACACCAGTAGCTGTGAAACGCATTCTTCCATCTCTTTCAGACGATAGATTGGTGATTCAGGATTTCAGGCATGAAGTTAATTTGCTCGTGAAGCTTCGTCACCCTAATATAGTCCAATTTCTTGGAGCTGTCACTGATAAGAAGCCGTTGATGTTAATTACAGAGTATTTGCGAGGGGGTGATCTTCACCAGTACCTCAAAGAAAAGGGCTCACTTAGCCCATCAACAGCTATTACCTTTGCCATGGATATTGCCAGAGGCATGGCTTATCTTCACAACGAGCCAAATGTCATAATTCACCGAGACCTAAAGCCAAGGAATGTTCTTTTGGTCAACACCGGCGCCGACCATTTAAAAGTTGGAGACTTTGGACTGAGCAAGCTCATCAAGGTTCAGAATTCTCATGATGTGTACAAAATGACTGGTGAAACAGGAAGTTACCGATACATGGCTCCTGAAGTTTTCAAGCACCGGAAATATGACAAGAAAGTTGATGTTTTCTCTTTTGCAATGATACTGTATGAGATGCTTGAAGGAGACCCACCATTGTCTAATTATGAACCTTATGAAGCAGCTAAATATGTGGCAGAAGGACAGCGGCCTATGTTCCGTGCGAAAGGATATATTACTGAACTGAAAGAGTTGACAGAGCAATGCTGGGCTGCTGACATGAACCACAGACCATCTTTCTTGGAAATTCTTAAGAGGCTTGAAAAGATCAAGGAAATTCTACCACCGGATCATCACTGGAACATATTTACTGCATAA | 1308 | 45.72 | MSCRDDNSGGHSSTSAAGKDKASDKQKEKARVSRTSLILWHAHQNDAAAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDVAKCLIEFGADVNAQDRWKNTPLADAEGAKKHSMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSSIIGKGSFGEILKACWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDKKPLMLITEYLRGGDLHQYLKEKGSLSPSTAITFAMDIARGMAYLHNEPNVIIHRDLKPRNVLLVNTGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLSNYEPYEAAKYVAEGQRPMFRAKGYITELKELTEQCWAADMNHRPSFLEILKRLEKIKEILPPDHHWNIFTA* | 436 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 13949444 | 13973750 | + | Vvi1g958 | Vvi1g958 | 770158 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g958 | 435 | ProSiteProfiles | Ankyrin repeat profile. | 67 | 99 | IPR002110 | GO:0005515 | |
| Vvi1g958 | 435 | Gene3D | Phosphorylase Kinase; domain 1 | 144 | 238 | - | - | |
| Vvi1g958 | 435 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Vvi1g958 | 435 | SUPERFAMILY | Protein kinase-like (PK-like) | 156 | 430 | IPR011009 | - | |
| Vvi1g958 | 435 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 278 | 290 | IPR008271 | GO:0004672|GO:0006468 | |
| Vvi1g958 | 435 | Gene3D | Transferase(Phosphotransferase) domain 1 | 239 | 428 | - | - | |
| Vvi1g958 | 435 | SMART | ANK_2a | 67 | 96 | IPR002110 | GO:0005515 | |
| Vvi1g958 | 435 | PIRSF | ILK | 2 | 435 | - | - | |
| Vvi1g958 | 435 | ProSiteProfiles | Ankyrin repeat region circular profile. | 67 | 99 | - | - | |
| Vvi1g958 | 435 | PANTHER | SERINE/THREONINE-PROTEIN KINASE STY8-LIKE | 17 | 427 | - | - | |
| Vvi1g958 | 435 | ProSitePatterns | Protein kinases ATP-binding region signature. | 165 | 186 | IPR017441 | GO:0005524 | |
| Vvi1g958 | 435 | ProSiteProfiles | Protein kinase domain profile. | 159 | 431 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi1g958 | 435 | Gene3D | - | 4 | 133 | IPR036770 | - | |
| Vvi1g958 | 435 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Vvi1g958 | 435 | SMART | serkin_6 | 159 | 424 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi1g958 | 435 | Pfam | Ankyrin repeats (3 copies) | 34 | 98 | IPR002110 | GO:0005515 | |
| Vvi1g958 | 435 | Pfam | Protein tyrosine and serine/threonine kinase | 162 | 417 | IPR001245 | GO:0004672|GO:0006468 | |
| Vvi1g958 | 435 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 17 | 427 | - | - | |
| Vvi1g958 | 435 | CDD | STKc_MAP3K-like | 165 | 417 | - | - | |
| Vvi1g958 | 435 | PRINTS | Tyrosine kinase catalytic domain signature | 234 | 247 | IPR001245 | GO:0004672|GO:0006468 | |
| Vvi1g958 | 435 | PRINTS | Tyrosine kinase catalytic domain signature | 272 | 290 | IPR001245 | GO:0004672|GO:0006468 | |
| Vvi1g958 | 435 | PRINTS | Tyrosine kinase catalytic domain signature | 388 | 410 | IPR001245 | GO:0004672|GO:0006468 | |
| Vvi1g958 | 435 | SUPERFAMILY | Ankyrin repeat | 38 | 125 | IPR036770 | - |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 76528 | PF07714 | PK_Tyr_Ser-Thr | 4.40E-65 | CL0016 | Vvi | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g958 | - | - | vvi:100242045 | 878.241 |