Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g96 ATGTCTGATCGGCCGAGAAGCTGCTTCGGTGTTTTTCCTTCTGATTTTGGACTGACGCGTTTGTCCTCCGGAGCTGCTCTGTTCTCCTCAGCTATCCCTTTTCTTCTTCTTCTTCTGCTGAAATTGAGCATCTCCGAATGCCCACCACGAAGAGTAGTCTCAGTCTCAAGAAGCTTTCTTCAATCCGAAACCTATATCTTCAAATCGGCTTCCCAAATGGGTTCTTACAAATCAGGCGATTCCACTTTCTATTCTCTCATTGAAAACTATGCCAATTCCGGCGACTTTGGGACTTTGTTTCAGGTTTTCGATCGAATGAAGCGCGAGCGCAGGGTGTTTATTGAAAAGAACTTCATTTTAGTGTTTAGGGCTTATGGGAAAGCCCACTTACCTGAGAAAGCCATCGAGTTGTTTGGTAGAATGGTGGATGAGTTTCAATGTAGGCGAACTGTTCGATCATTTAATTCGGTTCTTAATGTTATAATACAAGAGGGTCTTTTTCACCGAGCTTTGGAGTTTTATGAATGTGGGGTTGGTGGGAAGACGAATATTTCCCCCAATGTGCTTAGTTTTAATTTGGTTATTAAAGCTATGTGTAAATTAGGATTGGTTGATAGAGCCATTGAAGTGTTCAGAGAAATGGCCATTCAGAAATGTGAACCCGATGTGTTCACTTACTGTACTTTGATGGATGGGTTGTGTAAGGAGGATAGGATTGATGAGGCGGTTTTGCTGCTGGATGAGATGCAAATCGAAGGTTGCTTCCCAAGCTCAGTGACATTTAATGTGTTGATTAATGGGTTGTGCAAGAAGGGGGACATGGTCCGTGTGACAAAGCTTGTGGATAATATGTTCCTCAAAGGGTGTGTTCCAAATGAAGTGACTTACAATACGATTATCAATGGCTTGTGTCTCAAGGGGAAGTTGGACAAGGCGGTTAGTCTTTTGGATCGAATGGTCGCAAGTAAATGTGTGCCTAATGATGTTACCTATGGAACACTCATCAATGGACTCGTTAAGCAAGGAAGATCTGTTGATGGAGTCCATTTATTGAGTTCTTTGGAGGAAAGAGGGCATCATGCGAATGAATATGCATATTCAACCCTTATTAGTGGGTTGTTTAAGGAGGAAAAGTCCGAAGAGGCTATGGGATTGTGGAAGAAGATGGTGGAAAAAGGATGCCAACCCAATATTGTTGTTTATAGTGCTCTAATAGATGGTTTGTGTAGAGAAGGAAAATTAGATGAAGCCAAGGAAATTCTTTGTGAGATGGTGAATAAGGGTTGTACACCCAATGCTTTCACCTATAGTTCCTTGATAAAGGGTTTCTTTAAGACAGGTAATAGCCAAAAAGCAATTCGTGTGTGGAAAGAGATGGCCAAGAATAATTGTGTGCCTAATGAGATTTGTTATAGTGTACTCATCCATGGCCTATGTGAGGATGGGAAGCTGAGGGAGGCTATGATGATGTGGACACACATGTTGGGCCGTGGACTTAGACCTGATGTTGTGGCTTACAGTTCAATGATTCATGGCCTATGTAATGCTGGTTCAGTAGAAGTGGGTTTAAAGCTTTTCAATGAGATGCTCTGTCAGGAGTCTGATTCTCAGCCAGATGTAGTCACTTATAACATACTTCTCAGAGCTTTGTGTAAGCAGAATAGCATCTCTCATGCCATTGATCTTCTAAACAGTATGTTGGATCGAGGTTGCAATCCTGACTTAATTACGTGTAATATTTTCTTGAACGCTTTGAGAGAGAAGCTGAACCCACCTCAAGATGGGAGAGAATTCCTAGATGAGCTTGTGGTCCGGCTACATAAGCGGCAGAGAATTGTAGGTGCTGCCAAAATTATAGAAGTGATGCTGCAAAAGTTTCTTCCTCCAAACGCCTCCACTTGGGAAAGGATTATTCCGGAACTTTGCAAACCTAAGAAGGTTCAAGCAATCATTGATAAGTGTTGGAGCAGCCTATTTTTCTAA 1983 42.06 MSDRPRSCFGVFPSDFGLTRLSSGAALFSSAIPFLLLLLLKLSISECPPRRVVSVSRSFLQSETYIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIIDKCWSSLFF* 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 979379 981773 + Vvi1g96 Vvi1g96 769296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Vvi1g96 660 Pfam PPR repeat 82 109 IPR002885 -
Vvi1g96 660 Pfam PPR repeat 121 143 IPR002885 -
Vvi1g96 660 Pfam PPR repeat 365 394 IPR002885 -
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 180 284 IPR011990 GO:0005515
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 541 574 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 434 468 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 224 257 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 504 532 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 469 503 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 82 109 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 399 433 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 259 293 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 190 223 IPR002885 -
Vvi1g96 660 Pfam PPR repeat family 186 235 IPR002885 -
Vvi1g96 660 Pfam PPR repeat family 291 340 IPR002885 -
Vvi1g96 660 Pfam PPR repeat family 474 515 IPR002885 -
Vvi1g96 660 Pfam PPR repeat family 396 445 IPR002885 -
Vvi1g96 660 Pfam PPR repeat family 538 585 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 573 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Vvi1g96 660 Pfam PPR repeat 253 284 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vvi1g96 660 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 66 657 - -
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 445 534 IPR011990 GO:0005515
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 535 659 IPR011990 GO:0005515
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 285 352 IPR011990 GO:0005515
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 353 427 IPR011990 GO:0005515
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Vvi1g96 660 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 66 657 - -
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 64 178 IPR011990 GO:0005515
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Vvi1g96 660 SUPERFAMILY HCP-like 359 572 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g96 - - vvi:100249022 1205.28