Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g96 ATGTCTGATCGGCCGAGAAGCTGCTTCGGTGTTTTTCCTTCTGATTTTGGACTGACGCGTTTGTCCTCCGGAGCTGCTCTGTTCTCCTCAGCTATCCCTTTTCTTCTTCTTCTTCTGCTGAAATTGAGCATCTCCGAATGCCCACCACGAAGAGTAGTCTCAGTCTCAAGAAGCTTTCTTCAATCCGAAACCTATATCTTCAAATCGGCTTCCCAAATGGGTTCTTACAAATCAGGCGATTCCACTTTCTATTCTCTCATTGAAAACTATGCCAATTCCGGCGACTTTGGGACTTTGTTTCAGGTTTTCGATCGAATGAAGCGCGAGCGCAGGGTGTTTATTGAAAAGAACTTCATTTTAGTGTTTAGGGCTTATGGGAAAGCCCACTTACCTGAGAAAGCCATCGAGTTGTTTGGTAGAATGGTGGATGAGTTTCAATGTAGGCGAACTGTTCGATCATTTAATTCGGTTCTTAATGTTATAATACAAGAGGGTCTTTTTCACCGAGCTTTGGAGTTTTATGAATGTGGGGTTGGTGGGAAGACGAATATTTCCCCCAATGTGCTTAGTTTTAATTTGGTTATTAAAGCTATGTGTAAATTAGGATTGGTTGATAGAGCCATTGAAGTGTTCAGAGAAATGGCCATTCAGAAATGTGAACCCGATGTGTTCACTTACTGTACTTTGATGGATGGGTTGTGTAAGGAGGATAGGATTGATGAGGCGGTTTTGCTGCTGGATGAGATGCAAATCGAAGGTTGCTTCCCAAGCTCAGTGACATTTAATGTGTTGATTAATGGGTTGTGCAAGAAGGGGGACATGGTCCGTGTGACAAAGCTTGTGGATAATATGTTCCTCAAAGGGTGTGTTCCAAATGAAGTGACTTACAATACGATTATCAATGGCTTGTGTCTCAAGGGGAAGTTGGACAAGGCGGTTAGTCTTTTGGATCGAATGGTCGCAAGTAAATGTGTGCCTAATGATGTTACCTATGGAACACTCATCAATGGACTCGTTAAGCAAGGAAGATCTGTTGATGGAGTCCATTTATTGAGTTCTTTGGAGGAAAGAGGGCATCATGCGAATGAATATGCATATTCAACCCTTATTAGTGGGTTGTTTAAGGAGGAAAAGTCCGAAGAGGCTATGGGATTGTGGAAGAAGATGGTGGAAAAAGGATGCCAACCCAATATTGTTGTTTATAGTGCTCTAATAGATGGTTTGTGTAGAGAAGGAAAATTAGATGAAGCCAAGGAAATTCTTTGTGAGATGGTGAATAAGGGTTGTACACCCAATGCTTTCACCTATAGTTCCTTGATAAAGGGTTTCTTTAAGACAGGTAATAGCCAAAAAGCAATTCGTGTGTGGAAAGAGATGGCCAAGAATAATTGTGTGCCTAATGAGATTTGTTATAGTGTACTCATCCATGGCCTATGTGAGGATGGGAAGCTGAGGGAGGCTATGATGATGTGGACACACATGTTGGGCCGTGGACTTAGACCTGATGTTGTGGCTTACAGTTCAATGATTCATGGCCTATGTAATGCTGGTTCAGTAGAAGTGGGTTTAAAGCTTTTCAATGAGATGCTCTGTCAGGAGTCTGATTCTCAGCCAGATGTAGTCACTTATAACATACTTCTCAGAGCTTTGTGTAAGCAGAATAGCATCTCTCATGCCATTGATCTTCTAAACAGTATGTTGGATCGAGGTTGCAATCCTGACTTAATTACGTGTAATATTTTCTTGAACGCTTTGAGAGAGAAGCTGAACCCACCTCAAGATGGGAGAGAATTCCTAGATGAGCTTGTGGTCCGGCTACATAAGCGGCAGAGAATTGTAGGTGCTGCCAAAATTATAGAAGTGATGCTGCAAAAGTTTCTTCCTCCAAACGCCTCCACTTGGGAAAGGATTATTCCGGAACTTTGCAAACCTAAGAAGGTTCAAGCAATCATTGATAAGTGTTGGAGCAGCCTATTTTTCTAA 1983 42.06 MSDRPRSCFGVFPSDFGLTRLSSGAALFSSAIPFLLLLLLKLSISECPPRRVVSVSRSFLQSETYIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIIDKCWSSLFF* 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 979379 981773 + Vvi1g96 Vvi1g96 769296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Vvi1g96 660 Pfam PPR repeat 82 109 IPR002885 -
Vvi1g96 660 Pfam PPR repeat 121 143 IPR002885 -
Vvi1g96 660 Pfam PPR repeat 365 394 IPR002885 -
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 180 284 IPR011990 GO:0005515
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 541 574 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 434 468 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 224 257 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 504 532 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 469 503 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 82 109 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 399 433 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 259 293 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Vvi1g96 660 TIGRFAM PPR: pentatricopeptide repeat domain 190 223 IPR002885 -
Vvi1g96 660 Pfam PPR repeat family 186 235 IPR002885 -
Vvi1g96 660 Pfam PPR repeat family 291 340 IPR002885 -
Vvi1g96 660 Pfam PPR repeat family 474 515 IPR002885 -
Vvi1g96 660 Pfam PPR repeat family 396 445 IPR002885 -
Vvi1g96 660 Pfam PPR repeat family 538 585 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 573 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Vvi1g96 660 Pfam PPR repeat 253 284 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vvi1g96 660 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 66 657 - -
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 445 534 IPR011990 GO:0005515
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 535 659 IPR011990 GO:0005515
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 285 352 IPR011990 GO:0005515
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 353 427 IPR011990 GO:0005515
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Vvi1g96 660 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 66 657 - -
Vvi1g96 660 Gene3D Tetratricopeptide repeat domain 64 178 IPR011990 GO:0005515
Vvi1g96 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Vvi1g96 660 SUPERFAMILY HCP-like 359 572 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g96 - - - vvi:100249022 1205.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g96 . . . . . . . . . Cmo18g00596 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010862 0 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 3 2 1 29