Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g960 ATGGAGGTTAGATCTGAGGGTAGTTTACAGGTGAGGTGCGATAAGCTTCCAGCTCCGGTGATTCCAAGGACTCGTCTTCAGGTGTGGTTTATTCGTGTGTGCTCCAGCATTTTGCTATGGACGTGTCTGGTGCAGTTGGTTGCAGTGGGGGAGCTATGGCATCCGCGTTTGCTAACTGGAATATCATCCCACTTATCTCGGATAACTCCGTATCCTTTGCACGTCGAAAAGGCTATTTTATCGCCTCCTCCTCGTCCTCTCCCTGCAAGGAGCTACCAAAGCAATGGTTTTCTTAGAGTTTCTTGCAATGGGGGCTTGAACCAAATGCGGGCTGCGATCTGTGACATGGTCACTGTTGCTCGGTTTTTGAATCTCACTCTAGTAGTCCCAGAACTTGATAAGACATCTTTCTGGTCGGACCCTAGTAATTTTGAGGATATCTTTGATGTGAGACACTTCATTGAATCACTAAGAGATGAAGTTCGCATTGTCAAAAGGCTGCCTAAGAGGTTCAGCAGGAAGTACGGATACAAGCAACTTGCCATGCCCCCTGTCAGCTGGTCAAATGAAAAATATTACTCTGAACAGATTCTGCCACTTTTCAGTAAATACAAGGTGATACAATTCAACAAAACAGATGCACGCTTGGCAAACAATGGGCTCCCACTTGATCTTCAGAAACTCAGGTGTCGTGTTAATTTCCAGGCACTGAAATTCACTCCTCAAATTGAGGCTTTGGGGCACAAATTGGTTCATATTCTTCAGGAAAAGGGACCTTTTGTAGCTTTGCATTTAAGATACGAGATGGACATGCTGGCTTTCTCAGGTTGTACTCATGGCTGCACTGAGGAAGAAGCTGAGGAACTCAAGCAGATGAGGTATGCATATCCTTGGTGGAGAGAGAAAGAGATAGTGTCTGAAGAGAGGAGATTACAAGGTTTGTGCCCTCTCACACCAGAGGAGGTGGCTTTAGTTATGCAAGCACTGGGTTTTGATAAGGGCATACAGATCTATATTGCATCTGGTGAGATTTATGGCAGTGAACAGAGACTGGCAGCACTAAGAGCAGCATTTCCAAAGATTGTGAAAAAGGAAATGCTGCTAGGCCCAGAAGAATTGCAGCAATTCCAGAATCATTCCTCTCAAATGGCAGCCCTGGATTTCATGGTTTCTATTTCCAGTAATATTTTCATCCCCACCTACGATGGGAACATGGCAAAACTTGTGGAAGGCCACCGCAGGTACCTTGGATTTAGAAAATCCATCCTACTCCATCGAAAAGCACTTGTGGAATTGCTAGATTTGCATCAGAATGGGACTCTTTCGTGGAGTGAGTTTGAAGTTTCTGTCCGGCGGGCACATGACCAAAGGATGGGACAACCAACTCGTCGAAGAGTTATTCCAGACAAGCGCAAGGAGGAAGATTATTTTTATGCAAATCCTCAAGAGTGCCTCTGCGAGAGAGCAAATTGTGATGACCTACTAGGCCCTAGCAACCTAAGTACAGTGCGGTGA 1515 45.54 MEVRSEGSLQVRCDKLPAPVIPRTRLQVWFIRVCSSILLWTCLVQLVAVGELWHPRLLTGISSHLSRITPYPLHVEKAILSPPPRPLPARSYQSNGFLRVSCNGGLNQMRAAICDMVTVARFLNLTLVVPELDKTSFWSDPSNFEDIFDVRHFIESLRDEVRIVKRLPKRFSRKYGYKQLAMPPVSWSNEKYYSEQILPLFSKYKVIQFNKTDARLANNGLPLDLQKLRCRVNFQALKFTPQIEALGHKLVHILQEKGPFVALHLRYEMDMLAFSGCTHGCTEEEAEELKQMRYAYPWWREKEIVSEERRLQGLCPLTPEEVALVMQALGFDKGIQIYIASGEIYGSEQRLAALRAAFPKIVKKEMLLGPEELQQFQNHSSQMAALDFMVSISSNIFIPTYDGNMAKLVEGHRRYLGFRKSILLHRKALVELLDLHQNGTLSWSEFEVSVRRAHDQRMGQPTRRRVIPDKRKEEDYFYANPQECLCERANCDDLLGPSNLSTVR* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13988501 14007397 + Vvi1g960 Vvi1g960 770160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g960 504 PIRSF UCP009360 5 488 IPR024709 -
Vvi1g960 504 Pfam GDP-fucose protein O-fucosyltransferase 97 416 IPR019378 -
Vvi1g960 504 PANTHER OS02G0726500 PROTEIN-RELATED 20 500 - -
Vvi1g960 504 Gene3D - 235 426 - -
Vvi1g960 504 CDD O-FucT_plant 97 421 IPR024709 -
Vvi1g960 504 PANTHER RHAMNOGALACTURONAN I RHAMNOSYLTRANSFERASE 1 20 500 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g960 K23280 RRT; rhamnogalacturonan I rhamnosyltransferase [EC:2.4.1.351] - vvi:100247184 1010.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g960 Vvi14g985 ECH
Vvi1g960 Vvi17g419 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g960 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0935 . . . . . . . . . . . . . . . . . . . . . . . Cpe07g00146 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008374 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 35