Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g961 ATGGCCACTCTCTTTACTCTCGTATCATCTTCTTCCTCTGTTTTCTTCTTCCCTATCAAAACCCTAAAAAACCCACCAATCATTCACTCTAGAAGGCCGCCTTTCTCCCTTACTTGTCTCCGGTCGTTGGAAACTAACCCACCACCCCCAGTTCAGACCTTCTGGAAATGGCTTTTCGACCAAGGCGTAGTCTCCGGCAAGACTCCGGTAAAGCCGGGGATCGTCCCAGAAGGCCTAGGACTCGTTGCCCAGAGAGACATTGCTCGAAACGAGGCTGTTTTGGAAGTGCCCAAGAGGTTTTGGATAAACCCAGATGCAGTAGCAGCTTCGGAGATTGGGAGTGTATGTGGTGGCCTGAAGCCTTGGGTGTCTGTTGCTCTGTTCTTGATCAGAGAGAAGTTGAGAGACGAGTCGCCATGGCGAAGTTACCTTGATATTCTTCCAGAGTACACCAATTCTACTATTTATTGGTCAGAAGAGGAGCTCGTTGAGATTCAAGGAACACAACTGTCGAACACAACCTTAGGTGTGAAGGAATATGTGCAAAGTGAATTTCTTAAAGTTGAAGAAGAAGTCATACTCCCTCACAGCCAGCTTTTCCCTTTTCCTGTAACATTGGATGACTTCTTATGGGCATTTGGGATATTGAGATCCAGGGCATTTTCACGCCTTCGTGGTCAAAATCTTGTTTTGATCCCTCTTGCAGACTTGATCAATCACAGTCCGAGCATAACCACAGAGGAGTACGCATGGGAGATTAAAGGAGCAGGTCTTTTCTCTAGGGATCAATTATTTTCTCTAAGGACCCCAGTTTCTGTGAAGGCTGGTGAGCAGGTTTTGATCCAGTATGATTTGGACAAGAGCAATGCTGAGTTGGCTTTGGACTATGGGTTCATAGAATCGAGGCCAAACCGGAATTCTTATACCCTAACACTAGAGATATCTGAGTCAGACCCTTTTTTTGGGGACAAGCTAGATATTGCTGAGTCCAATGGTCTTAGTGAAATTGCATACTTCGACATTGTATTGGGCCAATCTCTTCCAGCTGCAATGCTGCCCTACTTGCGACTGGTAGCGCTTGGGGGACCTGATGCTTTTCTCTTGGAATCTATTTTTAGAAACACTATCTGGGGGCACCTTGAATTGCCTGTGAGCCGTGCCAATGAGGAGCTCATATGCCAAGTGATCCAAGATGCCTGCAAATCTGCCCTTTCCGGTTATCTTACCACCATTGAAGAGGATGAGAAGTTGAAGGAAGAAGGGAATCTCCATCCAAGGCTTGAGATTGCTGTTGGGGTGAGAACAGGGGAGAAGAAGGTGCTGCAACAAATTGATGGGATTTTCAGGGAAAGGGAAAGGGAATTGGATCAGTTGGAATATTACCAAGAAAGGAGGCTTAAGGACCTCGGCCTGTGTGGGGAGCAAGGTGAAATCATCTTTTGGGAGTCCAAGTAA 1455 46.53 MATLFTLVSSSSSVFFFPIKTLKNPPIIHSRRPPFSLTCLRSLETNPPPPVQTFWKWLFDQGVVSGKTPVKPGIVPEGLGLVAQRDIARNEAVLEVPKRFWINPDAVAASEIGSVCGGLKPWVSVALFLIREKLRDESPWRSYLDILPEYTNSTIYWSEEELVEIQGTQLSNTTLGVKEYVQSEFLKVEEEVILPHSQLFPFPVTLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPSITTEEYAWEIKGAGLFSRDQLFSLRTPVSVKAGEQVLIQYDLDKSNAELALDYGFIESRPNRNSYTLTLEISESDPFFGDKLDIAESNGLSEIAYFDIVLGQSLPAAMLPYLRLVALGGPDAFLLESIFRNTIWGHLELPVSRANEELICQVIQDACKSALSGYLTTIEEDEKLKEEGNLHPRLEIAVGVRTGEKKVLQQIDGIFRERERELDQLEYYQERRLKDLGLCGEQGEIIFWESK* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14007415 14010547 - Vvi1g961 Vvi1g961 770161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g961 484 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 307 481 IPR036464 -
Vvi1g961 484 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 34 477 - -
Vvi1g961 484 SUPERFAMILY SET domain 49 305 IPR046341 -
Vvi1g961 484 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 1 484 IPR011192 GO:0009507|GO:0030785
Vvi1g961 484 Pfam SET domain 78 283 IPR001214 GO:0005515
Vvi1g961 484 CDD SET_RBCMT 61 299 IPR044431 GO:0016279|GO:0018022
Vvi1g961 484 PIRSF RMT_SET 1 484 IPR011192 GO:0009507|GO:0030785
Vvi1g961 484 ProSiteProfiles SET domain profile. 61 284 IPR001214 GO:0005515
Vvi1g961 484 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 34 477 - -
Vvi1g961 484 Gene3D - 300 465 IPR036464 -
Vvi1g961 484 Pfam Rubisco LSMT substrate-binding 316 441 IPR015353 -
Vvi1g961 484 Gene3D set domain protein methyltransferase, domain 1 49 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g961 K00592 RBCMT; [ribulose-bisphosphate carboxylase]/[fructose-bisphosphate aldolase]-lysine N-methyltransferase [EC:2.1.1.127 2.1.1.259] - vvi:100243771 954.125
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g961 Blo01g00438 . Bda01g02141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00109 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007838 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 4 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14556 PF00856 SET 1.20E-08 No_clan Vvi TR