Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g963 ATGTCTTCGTCACATTTCACTGCAACGACTGACTCAATTGCTCAGGCTTTAGAAGCAAAAACCCCATCTGAGGCCATCTCTATCCTTTATTGCATTATTGACAGCCCTTCATCTTCTTCTGAGGCCCTACGAATAAAAGAACAGGCCATTACAAATCTCTCAGATCTCCTTAGACAAGAGAACCGAGCAGAGGATCTTCGAAATCTTCTGACCCAATTGAGACCCTTTTTTTCCTTGATCCCTAAGGCAAAAACTGCAAAAATTGTCCGTGGGGTCATTGATGCAGTAGCAAAGATACCAGACACATCAGATCTCCAGATTTCCCTCTGCAAAGACATGGTTGAAATTGCTCATATTGCTGAGCTGATTGAACTGCCAGTAGATCATGGGGCTGGATGTCTCATCATTTTTGAGGATCCCAAGACAGATGCTATATATCCAGCAACACTGGAAACCATTTCCAATATTGGTAAGGTTGTGGACAGCCTCTATGTGAGATCGGCCAAGATAATGGCTTAA 519 43.16 MSSSHFTATTDSIAQALEAKTPSEAISILYCIIDSPSSSSEALRIKEQAITNLSDLLRQENRAEDLRNLLTQLRPFFSLIPKAKTAKIVRGVIDAVAKIPDTSDLQISLCKDMVEIAHIAELIELPVDHGAGCLIIFEDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA* 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14045553 14050837 - Vvi1g963 Vvi1g963 770163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g963 172 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 2 115 - -
Vvi1g963 172 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 127 172 - -
Vvi1g963 172 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 143 168 IPR040780 -
Vvi1g963 172 Gene3D - 32 127 - -
Vvi1g963 172 Coils Coil 46 66 - -
Vvi1g963 172 PANTHER - 127 172 - -
Vvi1g963 172 PANTHER - 2 115 - -
Vvi1g963 172 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 118 IPR040773 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g963 K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6 - vvi:100252303 217.238
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g963 Blo01g00440 Blo16g01102 Bda01g02140 Bda11g01200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01200 . Bpe02g02328 Bma01g00111 Bma06g00711 . . . . . . . . Cpe07g00642 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068489 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1