Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g965 ATGAAGTTCGGGAAGGAGTTCAGGGCACAAATGGTGCCGGAATGGCAAGACGCATACATGGACTACAGTTTTCTTAAGACCCTCCTAAAAGAAGTGCAGCCCTTCAGTGGCCTAACACGACACAACAGCCCCCCGAGCCCTTCCGAATCCGACATTGAAAGCCAAGTCATTCTGGTGAATTCGGTGAGGAGGGACGGGGACGGGTCTGAGAGCTACGAGACCAAGTTTCTCATGTCAGCAGACGAGGGAGGAGAATACGAGCTTGTCTACTTTAGAAGGCTCGATGATGAGTTCAATAAAGTGGACAAGTTTTATAGGTCTAAGGTGGAAGAGGTGATGAAGGAGGCAGCCTTGTTGAATAAGCAAATGGATGCTTTCATTGCGTTTCGATTAAAAGTGGAGAATCCGCAGGGTTGGTTTGATAGATCAGCCGAGTTAACTCGTATCTCTAACGATGTCGCCACTTCAACCGCCACGTTAGCAGCTACTACTCCATCTGGAGTCCGAGCAAGCCGGAGAGTAGCTCATATGGATGTAATAGAAGAAGGAGGATCGATCAGTAATCATGAACAGTCGGATGAATCAAGTGATGAACATAAAGATGTGAACATAATCAAACCTGTAAACACAAGTGTCCAAGAACAGAAGCCAAGTAGCATCAAGGCAACAAGACCAGCTCCATTAGAAGTACTTAAGCGTGTGAGGATAAACAACACCGTGGAGACTCCTCGTTCCACCATTAAAGAAATCCTTAATGTTCCTAAGCCAGAAGAGCTGAATTTTACTCGAAAGAATCTAAGGAAAGTTGAAGATCAACTTAAGTGCGCTTTTGTCGAATTTTACCACAAGCTTCGGCTCCTTAAGAGCTACAGCTTCATGAATACGTTGGCGTTCTCGAAGATCATGAAGAAATATGATAAGATCACTTCTAGAAATGCGTCAAAATCTTATTTGAAGATGGTGGATAACTCCTTCCTTGGCAGCTCTGACCAGGTTACTAAACTTATGGAGAGGGTAGAAGCTACCTTCATCAAGCATTTCTCCAACTCAAATCGAACTAAAGGAATGAAAATTTTGCGACCGCAAGCAAGGAAAGAAAGGCATAGACTAACATTTTCTTTGGGTTTCTTTGCTGGCTGCACAGCTGCTCTCATTCTGGCCATTATTTTGATCGCTCGCACCCGCCGTCTCCTAGATTACAAGAAAGAGAATGACCAGTACATGGAAAACATGTTCCCTCTTTACAGCTTGTTCGGGCTAGTTGTTCTGCACATGCTTATGTATGCTGCAAATATATTCTTCTGGAGACGCTACAGAGTCAATTATTCATTTATATTTGGATTCAAGCGTGGAAGGGAGTTGGGCTACAGGGAAGTTTTCCTTCTTGCTTTTGGTCTAGCAGTATTAGCACAAGCCTGTGTGCTCTTAAACCTCGATATGGAGATGGACCCAAAAACAATGGAATATGAAGCTCTCACTGAACTTCTTCCCCTGGGTCTAGTTATGCTAGTAGTTGTCATATTAATCTGCCCCTTTAACATAGCTTATCGCTCCAGTCGATTCTTCTTACTCACATGTTTACTTCATTGTCTCTGCGCACCTCTCTACAAGGTCACACTCCCAGACTTTTTCTTGGCAGACCAACTAACTAGCCAGGTGCAAGCAATTAGAAGTCTGGAGTTTTATGTCTGCTATTATGGTTGGGGAGATTATAAACATAGACAAAACACCTGTAAATCAAGTGGTGTATACAATACTTTCTACTTCATTGTCGCTGTGATTCCCTACTGGTCTCGCCTCCTTCAGTGCCTCAGACGCCTGTTTGAAGAGAAAGATCCAATGCAAGGATACAATGGGCTGAAATATTTTGCAACAATTGTGGCAGTTTGTGTGAGAACAGCTTACAGTCTTGACAAGGGAATGGGGTGGAGAGTCATAGCGTGGGTTTCCTCCATAATTGCAGCAATATCGAGTACATATTGGGATCTTGTTATTGACTGGGGCCTACTGCAAAAGAACTCCAGGAACCGTTGGTTGAGGGACAAACTCCTTGTCCCCCACAAGAGTGTATACTTTGGAGCTATGGCCTTGAACGTGTTGCTGAGACTCGCCTGGATGCAAACCGTGTTGAATTTCCAGTTTTCCTTCTTACATAGACAGGCCCTGATTGCAATTGTTGCCGGCCTAGAAATTATTCGCCGTGGCATATGGAATTTCTTCAGGCTTGAGAACGAGCATTTGAATAATGTTGGCAAGTACCGTGCATTCAAGTCAGTACCTTTACCTTTCAACTACGATGAAGAGCAAGAAAAGGATGAGTAG 2322 43.97 MKFGKEFRAQMVPEWQDAYMDYSFLKTLLKEVQPFSGLTRHNSPPSPSESDIESQVILVNSVRRDGDGSESYETKFLMSADEGGEYELVYFRRLDDEFNKVDKFYRSKVEEVMKEAALLNKQMDAFIAFRLKVENPQGWFDRSAELTRISNDVATSTATLAATTPSGVRASRRVAHMDVIEEGGSISNHEQSDESSDEHKDVNIIKPVNTSVQEQKPSSIKATRPAPLEVLKRVRINNTVETPRSTIKEILNVPKPEELNFTRKNLRKVEDQLKCAFVEFYHKLRLLKSYSFMNTLAFSKIMKKYDKITSRNASKSYLKMVDNSFLGSSDQVTKLMERVEATFIKHFSNSNRTKGMKILRPQARKERHRLTFSLGFFAGCTAALILAIILIARTRRLLDYKKENDQYMENMFPLYSLFGLVVLHMLMYAANIFFWRRYRVNYSFIFGFKRGRELGYREVFLLAFGLAVLAQACVLLNLDMEMDPKTMEYEALTELLPLGLVMLVVVILICPFNIAYRSSRFFLLTCLLHCLCAPLYKVTLPDFFLADQLTSQVQAIRSLEFYVCYYGWGDYKHRQNTCKSSGVYNTFYFIVAVIPYWSRLLQCLRRLFEEKDPMQGYNGLKYFATIVAVCVRTAYSLDKGMGWRVIAWVSSIIAAISSTYWDLVIDWGLLQKNSRNRWLRDKLLVPHKSVYFGAMALNVLLRLAWMQTVLNFQFSFLHRQALIAIVAGLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEEQEKDE* 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14194101 14198256 + Vvi1g965 Vvi1g965 770165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g965 773 MobiDBLite consensus disorder prediction 187 202 - -
Vvi1g965 773 ProSiteProfiles EXS domain profile. 579 773 IPR004342 GO:0016021
Vvi1g965 773 ProSiteProfiles SPX domain profile. 1 319 IPR004331 -
Vvi1g965 773 CDD SPX_PHO1_like 2 315 IPR034092 -
Vvi1g965 773 MobiDBLite consensus disorder prediction 182 202 - -
Vvi1g965 773 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 35 - -
Vvi1g965 773 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 34 773 - -
Vvi1g965 773 Pfam EXS family 411 747 IPR004342 GO:0016021
Vvi1g965 773 Pfam SPX domain 43 321 IPR004331 -
Vvi1g965 773 Pfam SPX domain 1 33 IPR004331 -
Vvi1g965 773 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 3 34 773 - -
Vvi1g965 773 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 3 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g965 - - - vvi:100257438 1450.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02480 . . . . . . . . . . . . . . . Car04g01715 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193