Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g966 ATGACACAAGAATTGCATCCAAAAACCCAAAATTCTCAATACCAAATAAACAAGAAGATGAAGTTCGGGAAGGAGTTCACGGCACAGATGGTGCCGGAATGGCAGGCAGCATATATGGATTACAATTATCTCAAGACACAGCTGAAAGAAATCCAGCGTTTTCATGCAAGGGATAGGGCACCGGCTCGGTTGGTGAAGCGAACGTCATCGCTTTACAGAGCTTTCAGTGGTCTAATACAGAGACAGAAGTCACAAAACCAACCCACAAACTTAACCTCGCCAGACGCGGAGAGCCAAGTCATTGTGGTGAATTCTGTGGCCCAAGATGGCTCACAGGGCTACGAGACTAGGTTTTTTATGTCGGGAGAAGAAGGAGGAGAATACGAGCTGGTGTTTTTCAGAAGGCTAGATGATGAGTTCAATAAAGTTAATAAGTTTTACAGGTCTAAGGTGGAGGAGGTCTTGAAGGAGGCTGACGTGCTGACCAAGCAAATGAATGCCTTGATTGCTTTTCGGATAAAAGTGGAGAATCCAAATGGTTGGGCTGATAGGTCAAATGAGATTACTCGCCTTTCTTCTGATGTTGCAGCTTCATCGGCTGCATTGTCAGCCTCCGCTCCATCTGGGGCCAGAGCAGCAAGCATTTTCAAGGACTTTCTACTAGATGTCGAACCCACCAGCAGGAGGAGGCAACCAGATGAATCGAGCGATGGAAAGGATGAAACCAAGGAGGACAATGCTATCCACCAAAACATTGAGAAACAGAAGCCAAATAACTTCAGGGCAGCTAGACCTGCTCCGTTACAAATACTCGAACGTTTGAAAATCAACAACACTCTTGAGACTCCTCGATCAACCATTAAAGGCCTCCTCAATATTCCCAAGTGGACAGAGCCAAACTTCAATACAGAGTGTCTGAAGAAAGTTGAACAACGGCTTAAGCAGGCTTTGGTTGTATTTTATAACAAGCTGCGGCTTCTAAAGAGCTACAGCTTCTTGAATACCATGGCATTGTCCAAGATCATGAAGAAATACGACAAGATCACGTCAAGAAATGCATCAAAAGCTTACTTGAAAATGGTGGATAGCTCCTACCTTGGTAGCTCTGATGAGGTAACCAAACTCATGGAAAGAGTGGAAGCCACATTCATCAAACATTTCTCAAATGCAAACCGCAGTAAAGGCATGAGCATATTGAGACCAAAAGCAAAGAGAGAAAGGCACAGAGTAACATTTTTCATGGGTTTCTTTTCTGGATGCACAGCAGCTCTGATAGTGGCTCTTGTTTTGATTGCACGGGCTCGCAACTTCATAGATCATCCAGGGGCAACCCAGTACATGGAAACCATGTTTCCCCTTTACAGCCTGTTTGGATTTTTTGTCCTACACATGCTTGTGTATGCTGCTAATATTTACTTCTGGAGGCGGTACCGAGTCAATTATTCATTCATATTTGGTTTCAAGCAAGGAACAGAGATGGGCTACCGAGAAGTTCTCCTCCTCAGCTTTTGTCTGGCAACGCTAGCCCTGGCTAGTGTGGTCTCAAACCTCGACATGGAAATGGACCCCAAAACGAAGGACTATAAAGCAGTCACTGAACTTATCCCTCTGGTACTAGTTGTGCTTGTACTTATCATACTCCTCTGCCCATTCAACATCATCCTTCGCTCAAGTCGATTCTTCTTCCTCACATGCTTATTTCACTGTCTCTGTGCTCCTCTTTACAAGGTCACACTCCCAGATTTCTTCTTGGCAGATCAACTCACTAGCCAGTTGCAAGCCTTTAGGAGCCTGGAGTTCTATGTTTGCTACTATGGTTGGGGAGACTACAAACTCAGACAGAACACTTGCAGCACAAATGATGTCTTCAAAGCCTTCTCTTTCATTGTAGTTGCAATTCCATACTGGTGTCGCCTCTTTCAGTGCCTGCGAAGGCTGTTTGAGGAGAAGGATCCGATGCAAGGATACAATGGGCTGAAATATTTCTCGACCCTGGTTGCCATTAGTGTGAGGACAGCTTACAGCCTTGACAGGGGGAAAATAAACTGGAACATTATGGCCTGGATTTTCTCGGTCATTGCAGCAATCTGTGGTACATACTGGGACCTGGTAGTTGACTGGGGGCTTCTGCAAAGGCAATCCAAGAACCGCTGGTTGAGAGACAAACTCCTCATCCCCTACAAAAGCGTATATTTTGGAGCTATGGTGCTGAATGTTTTGTTGAGATTTGCCTGGTTACAGACAGTGTTGAATTTCCAGGTCTCTTTCCTACATAGGGAAGCCATGATTGCAATTTTTGCTAGCTTGGAGATCATCCGTCGTGGCATATGGAATTTCTTCAGGTTGGAGAACGAACATTTGAACAATGTGGGTGCATACCGCGCATTCAAGTCAGTACCATTACCCTTCAACCATGATGAGGATGATGACAAAGATGATTAG 2442 44.92 MTQELHPKTQNSQYQINKKMKFGKEFTAQMVPEWQAAYMDYNYLKTQLKEIQRFHARDRAPARLVKRTSSLYRAFSGLIQRQKSQNQPTNLTSPDAESQVIVVNSVAQDGSQGYETRFFMSGEEGGEYELVFFRRLDDEFNKVNKFYRSKVEEVLKEADVLTKQMNALIAFRIKVENPNGWADRSNEITRLSSDVAASSAALSASAPSGARAASIFKDFLLDVEPTSRRRQPDESSDGKDETKEDNAIHQNIEKQKPNNFRAARPAPLQILERLKINNTLETPRSTIKGLLNIPKWTEPNFNTECLKKVEQRLKQALVVFYNKLRLLKSYSFLNTMALSKIMKKYDKITSRNASKAYLKMVDSSYLGSSDEVTKLMERVEATFIKHFSNANRSKGMSILRPKAKRERHRVTFFMGFFSGCTAALIVALVLIARARNFIDHPGATQYMETMFPLYSLFGFFVLHMLVYAANIYFWRRYRVNYSFIFGFKQGTEMGYREVLLLSFCLATLALASVVSNLDMEMDPKTKDYKAVTELIPLVLVVLVLIILLCPFNIILRSSRFFFLTCLFHCLCAPLYKVTLPDFFLADQLTSQLQAFRSLEFYVCYYGWGDYKLRQNTCSTNDVFKAFSFIVVAIPYWCRLFQCLRRLFEEKDPMQGYNGLKYFSTLVAISVRTAYSLDRGKINWNIMAWIFSVIAAICGTYWDLVVDWGLLQRQSKNRWLRDKLLIPYKSVYFGAMVLNVLLRFAWLQTVLNFQVSFLHREAMIAIFASLEIIRRGIWNFFRLENEHLNNVGAYRAFKSVPLPFNHDEDDDKDD* 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14198850 14219965 + Vvi1g966 Vvi1g966 770166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g966 813 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 3 20 813 - -
Vvi1g966 813 CDD SPX 224 347 - -
Vvi1g966 813 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 20 813 - -
Vvi1g966 813 Coils Coil 144 164 - -
Vvi1g966 813 MobiDBLite consensus disorder prediction 226 261 - -
Vvi1g966 813 MobiDBLite consensus disorder prediction 226 251 - -
Vvi1g966 813 Pfam SPX domain 20 361 IPR004331 -
Vvi1g966 813 ProSiteProfiles SPX domain profile. 20 359 IPR004331 -
Vvi1g966 813 CDD SPX_PHO1_like 21 355 IPR034092 -
Vvi1g966 813 Pfam EXS family 450 787 IPR004342 GO:0016021
Vvi1g966 813 ProSiteProfiles EXS domain profile. 618 813 IPR004342 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g966 - - - vvi:100262561 1509.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g966 . . . . . . . . Cmo04g01756 . . . . . . . Cpe01g01483 . . . . . . . . . . . . . . . . . . . Csa05g02482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193