Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g967 ATGGCCGTGATAAAATCTGGGAGTGGGGCTATGAGCTTCACCAAGGCTCTGGCTGTTTCTTTGATATCTCTGCCTTTTCTCTTCACACTCTTCGTTCTCTACCGGAACCCACCTTCTGATCCAACCCCAGATTTCAGAGAAGCTAGGGTTTTGGACGTGCCACCCAGGATTGTTAATGCGTTGAAACTGGGTACGAAAACAGTATTCAATGATAATTCCTCTCAACCTGCTGACATGTCTAAAGACAGTCTGCTTGGTGGGCTTCTTGCTGCTGGATTTGGCGAAAAATCTTGCTTAAGCAGGTACCAGTCTGCCTTGTATCGAAAAATTTCACCTTATAAGCCTTCTTCCTATCTTCTTTCCAGATTGCGGAAGTATGAAGACCTCCATAAACATTGTGGACCCCATACCAAATCCTACAGGAAAACCATAAAACTACTCAAGTCTGGCCACAGTGTTGGCCCAACAGATTGTAACTATGTTGTGTGGATATCTTACAGTGGCTTAGGGAACAGGATCCTCACCCTGGCTTCTGCATTCCTTTATGCTCTTCTCACAAACCGTGTCCTGCTTGTTGACCGGGGAAAAGACATGGCTGATCTATTCTGTGAGCCATTTCCTGAAAAATCATGGTTACTGCCCCTGGACTTTCCCCTACTGCCTAAATTCAACAGCATTAACAAAGAATCTCCTCATTGTTTTGGGAAGATGCTGAAGAATAATATCATAAATTCCTCAACAGAACAACCGCCACCATTTTTATATATCTACCTGAGTCACGATTATGGTGATCATGATAAGCTTTTCTTCTGTGATCAGGAACAAACCCTTCTTGGGAAAGTCCCTTGGTTGATCATGAAGACTAATAACTACTTTGTCCCATCTCTCTTCTTGATGCCTTCTTTTGAACAAGAACTAAGCAAATTATTCCCAGAAAAGGAAACTACTTTCCATCACTTGGGTCGGTATCTTTTCCACCCTTCAAATCAAGTATGGGGACTGATCACAAGGAACATGTATTGGGAGCAGTCAGCCATGAGTGGGGAGGTGGTCAGCGTATACCAGCCAAGCCATGAGGAAGTCCAACAGAGTGAGAAGCAGGGGCACAACAGGAAGGCATGGGCAGAAATGTATCTCCTAAGTACGACTGAGGCATTGATAACCAGCGCATGGTCAACCTTTGGCTATGTGGCTCAGGGTCTTGGAGGTGTGACGCCTTGGATTCTGTACAAGCCTCAAAATCGGACAGCTCCTGATCCACCTTGTGGCAGGGCAATGTCAATGGAGCCATGCTTTCATGCCCCTCCCTTCTATGACTGTAAGGCGAAGACAGGAGTCGATACTGGTGCGCTTGTTCCTCATGTAAGACACTGTGAAGACATGAGCTGGGGCCTCAAGCTGGTTGGTAGACATAGAGAGTTGTAG 1425 45.68 MAVIKSGSGAMSFTKALAVSLISLPFLFTLFVLYRNPPSDPTPDFREARVLDVPPRIVNALKLGTKTVFNDNSSQPADMSKDSLLGGLLAAGFGEKSCLSRYQSALYRKISPYKPSSYLLSRLRKYEDLHKHCGPHTKSYRKTIKLLKSGHSVGPTDCNYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGKDMADLFCEPFPEKSWLLPLDFPLLPKFNSINKESPHCFGKMLKNNIINSSTEQPPPFLYIYLSHDYGDHDKLFFCDQEQTLLGKVPWLIMKTNNYFVPSLFLMPSFEQELSKLFPEKETTFHHLGRYLFHPSNQVWGLITRNMYWEQSAMSGEVVSVYQPSHEEVQQSEKQGHNRKAWAEMYLLSTTEALITSAWSTFGYVAQGLGGVTPWILYKPQNRTAPDPPCGRAMSMEPCFHAPPFYDCKAKTGVDTGALVPHVRHCEDMSWGLKLVGRHREL* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14246015 14249230 + Vvi1g967 Vvi1g967 770167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g967 474 Pfam Xyloglucan fucosyltransferase 65 337 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vvi1g967 474 Pfam Xyloglucan fucosyltransferase 337 441 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vvi1g967 474 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 337 472 - -
Vvi1g967 474 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 9 337 - -
Vvi1g967 474 PANTHER FUCOSYLTRANSFERASE 2-RELATED 9 337 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vvi1g967 474 PANTHER FUCOSYLTRANSFERASE 2-RELATED 337 472 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vvi1g967 474 Gene3D - 156 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g967 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - vvi:100243671 670.233
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g967 Vvi17g575 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g967 . . . . . . Bma14g01656 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0939 Cone19ag0933 . . . . . . . . Bda07g01477 . Bpe11g01651 . . . . . . Cma04g01674 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g575 ECH 82 516 Xyloglucan Fucosyltransferase1 AT1G14100 52.4 2.8e-138 489.2
Vvi1g967 ECH 72 475 Xyloglucan Fucosyltransferase1 AT1G14110 52.2 6.6e-126 448.0
Vvi17g575 ECH 91 518 Xyloglucan Fucosyltransferase1 AT1G14110 50.9 1.2e-114 410.6
Vvi3g408 . 27 505 Xyloglucan Fucosyltransferase1 AT1G49710 69.9 3.5e-197 684.9
Vvi18g1437 . 1 400 Xyloglucan Fucosyltransferase1 AT1G71990 71.5 3.4e-171 598.2
Vvi17g575 ECH 21 515 Xyloglucan Fucosyltransferase1 AT2G03210 51.0 1.2e-150 530.4
Vvi17g575 ECH 35 513 Xyloglucan Fucosyltransferase1 AT2G03220 56.7 8.3e-168 587.4
Vvi1g967 ECH 8 468 Xyloglucan Fucosyltransferase1 AT2G03220 54.2 1.2e-166 583.6
Vvi3g408 . 20 505 Xyloglucan Fucosyltransferase1 AT3G19280 68.3 2.7e-194 675.2
Vvi17g575 ECH 21 515 Xyloglucan Fucosyltransferase1 AT2G03210 51.0 1.2e-150 530.4
Vvi17g575 ECH 35 513 Xyloglucan Fucosyltransferase1 AT2G03220 56.7 8.3e-168 587.4
Vvi1g967 ECH 8 468 Xyloglucan Fucosyltransferase1 AT2G03220 54.2 1.2e-166 583.6
Vvi17g575 ECH 21 515 Xyloglucan Fucosyltransferase1 AT2G03210 51.0 1.2e-150 530.4
Vvi17g575 ECH 82 516 Xyloglucan Fucosyltransferase1 AT1G14100 52.4 2.8e-138 489.2
Vvi1g967 ECH 72 475 Xyloglucan Fucosyltransferase1 AT1G14110 52.2 6.6e-126 448.0
Vvi17g575 ECH 91 518 Xyloglucan Fucosyltransferase1 AT1G14110 50.9 1.2e-114 410.6
Vvi3g408 . 20 505 Xyloglucan Fucosyltransferase1 AT3G19280 68.3 2.7e-194 675.2
Vvi3g408 . 27 505 Xyloglucan Fucosyltransferase1 AT1G49710 69.9 3.5e-197 684.9
Vvi18g1437 . 1 400 Xyloglucan Fucosyltransferase1 AT1G71990 71.5 3.4e-171 598.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009001 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 33