Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g974 ATGAAGTACGTTTTAGTGACGGGTGGAGTGGTAAGCGGTCTCGGGAAAGGAGTGACTGCCAGTAGTATTGGATTGATTCTTAAGGCCTGCGGACTTCGAGTTACTTCCATCAAGATAGATCCTTATTTGAACACAGATGCTGGAACGATGTCCCCTTTTGAGCATGGGGAAGTGTATGTCTTAGATGATGGTGGAGAGGTGGACCTGGACCTTGGAAACTATGAGCGATTTCTAGATATCAAGTTGACCCGTGATAATAATATCACCACTGGGAAGATTTACCAGTCTGTTATTGACAAAGAGAGAAGAGGAGATTATCTGGGAAAAACTGTCCAGGTTGTTCCTCACATCACGGATGCCATTCAAGAGTGGGTTGAGCGTGTAGCAAAGATACCAGTGGATGGGGAAGAAGGTCCAGCTGATGTTTGTGTCATAGAATTGGGTGGAACTATAGGAGACATTGAATCAATGCCATTTATTGAGGCTCTTGGGCAATTCTCTTACCGTGTAGGTGCTGGAAACTTCTGCTTGATTCATGTCAGCCTTGTGCCCGTTCTAAGTGTAGTTGGTGAACAGAAAACAAAGCCTACACAGCATAGTGTTCGGGGACTGAGAGGCCTTGGTTTGGCACCAAATATCTTAGCCTGTCGCAGCACAACGGCACTTGATGAAAATGTGAAGGCGAAGCTCTCCCAATTTTGCCATGTCTCGGCAGAAAACATCATCACTCTATATGATGTTTCCAACATCTGGCACATCCCTTTGCTTTTACGAGATCAGAAGGCACATGAAGCAATCTTGAAAGTGTTGAACCTTCTAAGTGTTGCTGGGGAGCCATGTTTAGAGGAATGGACTTCTAGGGCTGAACTCTATGACATGTTACATGAGCGAGTGAGAATTGCCATGGTTGGAAAGTATACAGGCCTTTCTGATTCTTACCTCTCTGTAATAAAGGCTCTTCTGCACGCTTCTGTTGCCCAAGGCAAGAAACTCATTGTGGATTGGGTTCCAGCCTGTGACCTTGAACCTGAAACAGCAAAAGAGAATCCTGATGTTTACAATGCTGCATGGAATTTGTTGAAGGCTGCAGATGGGGTCCTGGTTCCAGGAGGTTTTGGTGACAGAGGTGTTCAAGGGAAAATTCTTGCCACCAAGTATGCCCGAGAAAACAGAATTCCATTCCTTGGTATTTGTCTAGGAATGCAAATTGCTGTTATTGAGTTTGCTCGATCTGTTCTTGGTCTGAAAGATGCAAACAGCACTGAGTTTGACCCCAACACCAAGAATCCCTGTGTTATATTCATGCCTGAGGGCTCAACAACCCACATGGGAGGAACCATGCGTTTGGGATCAAGGAGGACATATTTCCAGGTTATGGACTGCAAATCTGCAAAGCTATATGGCAATAGGAGCTTCATTGATGAGCGACATCGACATAGATACGAGGTGAATCCTAACATGGTGATGCATCTTGAAAATTCCGGTCTTTCATTCACTGGAAAAGATGCAAGTGGTCAACGTATGGAGATTGTTGAGTTGCCTAATCATCCATACTTTGTTGGTGTCCAATTCCATCCTGAATTTAAATCAAGACCTGGAAAACCTTCTGCTCTATTTTTAGGGCTCATAGCAGCAGCATGTGGGCAGTTGGATAGTGTTTTAAAGGAGGATCGATTCAGCCAAAAAATAGGGACAGGGAAAGGAGGAATGAGCAATGGTACTAAAATGGTGAAAACATACCAAAATGGATCTCCGACTAAGCCTGCTAATGGATCATTTGATGATGTTTACCGCAATTGTAATGGTGTTCAGGTTTAA 1818 44.17 MKYVLVTGGVVSGLGKGVTASSIGLILKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVYVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDAIQEWVERVAKIPVDGEEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGAGNFCLIHVSLVPVLSVVGEQKTKPTQHSVRGLRGLGLAPNILACRSTTALDENVKAKLSQFCHVSAENIITLYDVSNIWHIPLLLRDQKAHEAILKVLNLLSVAGEPCLEEWTSRAELYDMLHERVRIAMVGKYTGLSDSYLSVIKALLHASVAQGKKLIVDWVPACDLEPETAKENPDVYNAAWNLLKAADGVLVPGGFGDRGVQGKILATKYARENRIPFLGICLGMQIAVIEFARSVLGLKDANSTEFDPNTKNPCVIFMPEGSTTHMGGTMRLGSRRTYFQVMDCKSAKLYGNRSFIDERHRHRYEVNPNMVMHLENSGLSFTGKDASGQRMEIVELPNHPYFVGVQFHPEFKSRPGKPSALFLGLIAAACGQLDSVLKEDRFSQKIGTGKGGMSNGTKMVKTYQNGSPTKPANGSFDDVYRNCNGVQV* 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14669980 14678135 + Vvi1g974 Vvi1g974 770174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g974 605 Pfam CTP synthase N-terminus 2 272 IPR017456 GO:0003883|GO:0006221
Vvi1g974 605 CDD CTPS_N 2 268 IPR017456 GO:0003883|GO:0006221
Vvi1g974 605 SUPERFAMILY Class I glutamine amidotransferase-like 296 549 IPR029062 -
Vvi1g974 605 PANTHER CTP SYNTHASE 1 569 - -
Vvi1g974 605 TIGRFAM PyrG: CTP synthase 1 545 IPR004468 GO:0003883|GO:0006221
Vvi1g974 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 272 IPR027417 -
Vvi1g974 605 Pfam Glutamine amidotransferase class-I 309 544 IPR017926 -
Vvi1g974 605 Gene3D - 1 291 IPR027417 -
Vvi1g974 605 Gene3D - 295 560 IPR029062 -
Vvi1g974 605 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 299 552 - -
Vvi1g974 605 Hamap CTP synthase [pyrG]. 1 550 IPR004468 GO:0003883|GO:0006221
Vvi1g974 605 CDD GATase1_CTP_Synthase 298 543 IPR033828 GO:0003883|GO:0006241
Vvi1g974 605 PANTHER CTP SYNTHASE 1 569 IPR004468 GO:0003883|GO:0006221
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g974 K01937 pyrG, CTPS; CTP synthase [EC:6.3.4.2] - vvi:100249622 1203.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00731 Cam01g0759 Cec01g0759 Cco01g0785 Clacu01g0751 Cmu01g0720 Cre09g1785 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000805 1 2 2 1 2 4 4 4 4 2 4 3 3 3 2 2 3 4 4 4 3 3 3 3 3 3 3 6 3 3 91