Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g976 ATGGCTGCAGCTCCTGATGTGAGGTTTGTCTTCCTGTCTTCTCTACTTCTCGTTTGCGTTACTTCTCATTCAGTTTCTTCACATCACCCATCTGCACTCAAAAAGCAAGCTTCGACCCTGGTTGCCCTTAAACAAGCTTTTGAAGCTCCCCATCCTTCTTTGAATAGCTGGAAGGTGTCAAACTACAGGTCTCTCTGCTCTTGGACTGGCGTCCAATGTGATGATACCAGCACATGGGTAGTTTCTTTAGACATATCTAATTCTAACATTTCTGGTGCTCTGTCACCTGCAATCATGGAACTTGGAAGTCTTCTTCATCTAGACCTCTCAAGTTGTGGCTTGGAGGGTCCAATTCCGCCAGAGTTGGGTAATCTTAAACATCTGGACACTCTCTTTTTGCAAACAAATCAACTCAGTGGTTCCATCCCCCCTCAGCTTGGCAATTTGAGTAGCTTGAAATCTCTTGATCTTTCAAACAATGGACTCACAGGAGAAATCCCACTTGAGTTTTCGGAGCTCACTGAGCTGACTCTCTTGCAACTATTCATCAACAAGTTTCACGGAGAGATTCCCCACTTCATTGCAGAGCTTCCCAACTTGCAGATTCTTCTACTAAATGGAAACCGATTCACAGGGAACATTCCATCTGAAATAGCCAAAATCAAATCTCTGCTCTGTGGATCCTACCTGAACCAATGCAACTATTCATCAGCCTCACCTTTAGAATCCAAGAATCAACATGACACCAGCTCGCATGACAATAATGTTATAGGGAGAGAAATACAGACGTTGGGTAGGATTCGACACAGGAATATAGTGCGGCTGCTGGCATTTTGTTCAAACAAAGAGACCAATTTACTTGTCTACGAGTACATGCCAAATGGGAGCTTAGGTGAAGGCCTCTGTTACTTGCACCACGATTGTTCTCCATTAATACTCCACCGAGATGTGAAGTCCAATAACATCTTACTCAACTCCGATTATGAGGCTCACGTAGCAGATTTTGGACTCGCCAAGTTCTTGCAAGACAATGGAACTTCAGAGTGCATGTCTGCAATAGCGGGCTCTTACGGTTACATTGCTCCAGAGTACGCCTACACATTGAAAGTTGATGAGAAGAGCGATGTTTACAGCTTTGGGGTGGTGCTGTTGGAGCTGATAACAGGGCGAAGACCAGTTGGTGGGTTTGGAGAAGAAGGATTGGACATTGTTCAATGGAGCAAGATACAAACCAACTGGAGCAAGGAAGGAGTGGTGAAAATCCTAGATGAACGACTAAGAAACGTTCCAGAGGATGAAGCAATCCAGACGTTCTTTGTTGCAATGCTGTGTGTCCAAGAGCACAGCGTGGAGCGACCGACTATGAGAGAACTTATCTTAATTTGCATTGCTAACAAAAAATCCCTAGAGTATGAAGAGCCGAAACAAACCCTAGACTTGCTTCACCTTCATGATCTCACCAACATTCCACCCCCCTCATTTTATTTTCTGAAAGATATGGAGAACGAGACCAAGACTCCCTTTTTGTAG 1530 44.38 MAAAPDVRFVFLSSLLLVCVTSHSVSSHHPSALKKQASTLVALKQAFEAPHPSLNSWKVSNYRSLCSWTGVQCDDTSTWVVSLDISNSNISGALSPAIMELGSLLHLDLSSCGLEGPIPPELGNLKHLDTLFLQTNQLSGSIPPQLGNLSSLKSLDLSNNGLTGEIPLEFSELTELTLLQLFINKFHGEIPHFIAELPNLQILLLNGNRFTGNIPSEIAKIKSLLCGSYLNQCNYSSASPLESKNQHDTSSHDNNVIGREIQTLGRIRHRNIVRLLAFCSNKETNLLVYEYMPNGSLGEGLCYLHHDCSPLILHRDVKSNNILLNSDYEAHVADFGLAKFLQDNGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRRPVGGFGEEGLDIVQWSKIQTNWSKEGVVKILDERLRNVPEDEAIQTFFVAMLCVQEHSVERPTMRELILICIANKKSLEYEEPKQTLDLLHLHDLTNIPPPSFYFLKDMENETKTPFL* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14811851 14816337 - Vvi1g976 Vvi1g976 770176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g976 509 Gene3D Ribonuclease Inhibitor 150 229 IPR032675 -
Vvi1g976 509 Gene3D Ribonuclease Inhibitor 34 149 IPR032675 -
Vvi1g976 509 SMART serkin_6 200 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g976 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Vvi1g976 509 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vvi1g976 509 ProSiteProfiles Leucine-rich repeat profile. 151 172 IPR001611 GO:0005515
Vvi1g976 509 Pfam Protein kinase domain 247 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g976 509 SUPERFAMILY Protein kinase-like (PK-like) 255 459 IPR011009 -
Vvi1g976 509 PANTHER UNNAMED PRODUCT 300 466 - -
Vvi1g976 509 PANTHER UNNAMED PRODUCT 6 104 - -
Vvi1g976 509 PANTHER UNNAMED PRODUCT 103 221 - -
Vvi1g976 509 PANTHER UNNAMED PRODUCT 255 299 - -
Vvi1g976 509 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 300 466 - -
Vvi1g976 509 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 103 221 - -
Vvi1g976 509 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 6 104 - -
Vvi1g976 509 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 255 299 - -
Vvi1g976 509 Gene3D Phosphorylase Kinase; domain 1 233 292 - -
Vvi1g976 509 SUPERFAMILY L domain-like 35 226 - -
Vvi1g976 509 ProSiteProfiles Protein kinase domain profile. 152 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g976 509 Pfam Leucine Rich Repeat 104 125 IPR001611 GO:0005515
Vvi1g976 509 Pfam Leucine Rich Repeat 151 173 IPR001611 GO:0005515
Vvi1g976 509 Gene3D Transferase(Phosphotransferase) domain 1 295 482 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76529 PF00069 Pkinase 1.40E-29 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g976 - - vvi:100258232 399.823